G105200


Basic Information

Item Value
gene id G105200
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4243467 ~ 4246010 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU119577
TCAGTGGAACAATATTTTATTTTTTCTGAATATAAATACAAACATCACACAGAATCTCACATCATTATTTTATACACTAATCTAAAAGTCTGTGCGGAGGAAAATCTGTACCACCTCCACCAGAGTTCCCATGGGGTGTGGCATTTGATATTTGAAAAGCTGGTTGGTGAATGATGGGCTTTGGGAGTTTGAATGTGCGCATATCACTGGGCTTTATCTGCAAGTGCAGCAGCCTCCTCCTTCTCCTTCTGTGCTTCCTCTCTCCATCGAGCCTTCTTCTCCATGTTACGAGAGGTCAGATTGTCATGCCGACCTGCAGCCTGTTTGCCAGTGATAACCATAATGAGGCATGCCCCGATGGTCAGTGCCATCATGACATAGCAGGCCTTCACACGTACTCTGTTCCTGGCAGCATCAATCATCTCAAAAGACACAAACTCGGGAATCTGCTCTGCGGCTTTGAATCGCCCGGACCACACCAGCATCTTCCTATCCCAGTCTGATGGGCGGTAGCCCGGTACTTTAAACCCAAGCCGTTGAGCCCGTTCTGTGGTCTGGTGGGGTGCAGATGCCCCTTCTTGAGGCTTGCTGCACAGTCTTCTGCTCCCTGTGTTCATCACACCTCTCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU119577 True 629 TUCP 0.49 4 4243467 4246010

Neighbor

gene id symbol gene type direction distance location
CI01000018_04239141_04241413 CCDC58 coding downstream 2054 4238253 ~ 4241413 (-)
CI01000018_04231186_04233076 NA coding downstream 10391 4230919 ~ 4233076 (-)
CI01000018_04221457_04229417 NA coding downstream 14050 4221236 ~ 4229417 (-)
CI01000018_04118240_04160401 VIPR1B, VIPR1 coding downstream 83066 4117987 ~ 4160401 (-)
CI01000018_04075425_04081550 NKTR coding downstream 161917 4075405 ~ 4081550 (-)
CI01000018_04248388_04258010 KPNA1 coding upstream 2112 4248122 ~ 4258038 (-)
CI01000018_04307560_04321214 QTRTD1, QTRT2 coding upstream 60911 4306921 ~ 4322286 (-)
CI01000018_04336914_04342114 NA coding upstream 90579 4336589 ~ 4342114 (-)
CI01000018_04344907_04359005 GRAMD1C coding upstream 98081 4344091 ~ 4359005 (-)
CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding upstream 114609 4360619 ~ 4364887 (-)
G105185 NA non-coding downstream 5332 4234605 ~ 4238135 (-)
G105263 NA non-coding downstream 24558 4218678 ~ 4218909 (-)
G105261 NA non-coding downstream 32209 4210897 ~ 4211258 (-)
G105259 NA non-coding downstream 36330 4206905 ~ 4207137 (-)
G105148 NA non-coding downstream 143310 4099921 ~ 4100157 (-)
G105277 NA non-coding upstream 39729 4285739 ~ 4285992 (-)
G105304 NA non-coding upstream 186181 4432191 ~ 4432482 (-)
G105306 NA non-coding upstream 198792 4444802 ~ 4445367 (-)
G105307 NA non-coding upstream 208251 4454261 ~ 4454478 (-)
G105213 NA non-coding upstream 338618 4584628 ~ 4587775 (-)
G105104 NA other downstream 225650 4007697 ~ 4017817 (-)
G104968 NA other downstream 742953 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 1842564 2389201 ~ 2488018 (-)
G103842 NA other downstream 2283409 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 609071 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1645326 6020861 ~ 6025876 (-)
G106538 NA other upstream 2284437 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2394602 6639207 ~ 6649971 (-)

Expression


Co-expression Network