G105213


Basic Information

Item Value
gene id G105213
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 4584628 ~ 4587775 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU119591
AGCGAGCAGGTCGCTTCGAGCATCGTTCGTGGGTTGGGCCTCATTAGGCACAGAGGGCCGTTTGGGAGTGAGAGATTGGGCTGCACTGGTGGGAGGGGGTGGGGCTACTGGTGGAGGAGGGGCAGCCATTGGTACAGAGGTAGGTGGAATGGGTGGGGCATAGCCAGCGACTGCTCCCATCGGTCCTAGATGGCCTGGTGGCGGGACCGGTCCCATGGGTGGCATAGCAAAAGCGGTTTGTGCTGATGGGATGACAGCAGGTGGTGGAGGCGGTGCCCCAGAATTCATGTAATCCACGCTGTAGTCGGCAGGTGGGAGGGCCATAGAGCCGTTAATTGTGTTTGATACTGGTGGAGGGGGCGGAGCCTGGTGCGGACGACCCAGTGTGCCAGAACGGTATGCCATAGGCCCACCCCGGTAATCCTGGTCCATGGTCATTTGGGTATGAGCTGACAGGGCCGCCATGCTGGGCGGAGGCCCAGAGTAAGTGTGGGCGTGGCCAGCGTGGTTGGCCATGGAGAGATAACCGTGATCTCCATGATCTCCATGAGACCTGTGCTCTGGGGACATGATGCCCTCCGTGGAGCCTCCTCTGTGCACAGTGTGGGAATGTCGATGGTCAGGTCTCAGTTCCTTATCGAAGGCCATCATGTTCCATTCCTGCCTGCGGTTTCGAGCTTTTCGCACCTTTTTCACCTCCCTCTGCAGTGTGCCGTCCACACAGCGTCTCTGCTCCTTCTGTCTTCTTTTCTCTTTCCTCTTGTCTTCTGTGTCCTGTAACATCTTCTCCTTCCACAGGTCAAAGAAGTAGGAGGGGTCAGTGTAGAACTTCAGTCCTTCTTTATCATCATCTCTATGGCAACAAAAATGAAAAACACTTCATTTTCGTGATTGATTTTGATTATTCAAAGCTATTTTAAATAATTTCTCTCAATTAATCTCTCAATAAAGCAATGAGTGTGGTAGATTTGTCTCTGAATACATTTATGTAACCATTCCCATTCAGAATGCCAGTTGCTGGATTGCTTTTATGGACCTCTTCAGGGGAGAAAAGGATTTTAAAAGCATCTTGATGCATCTTTTCTGAGTGGCTGCTTTTCCAAAAGTGCTATTAATTGGCCATTAATCATTTATGCAAAATCTCCTAAAACTCTGTTAACCGCGTTCAGCCGAACAGACAGAAAAAGATGAGTCAGAGCGCAGCCACTGTCCCTTGAAACATTCCCTCCACACATTCAGCATTAGATCTGTTTAAGTATTAATGAGTGGCCCATATTCACTACCTTGAGAGCTAGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119591 True 1297 lncRNA 0.50 4 4584628 4587775

Neighbor

gene id symbol gene type direction distance location
CI01000018_04557779_04561445 RNF6 coding downstream 22631 4557636 ~ 4561997 (-)
CI01000018_04491510_04539751 ATP8A2 coding downstream 44877 4491235 ~ 4539751 (-)
CI01000018_04464837_04473051 NA coding downstream 111577 4464638 ~ 4473051 (-)
CI01000018_04397198_04411105 BOC coding downstream 173523 4396649 ~ 4411105 (-)
CI01000018_04361150_04364887 ATP6V1A.L, ATP6V1AA, ATP6V1AB, ATP6V1A coding downstream 219741 4360619 ~ 4364887 (-)
CI01000018_04595424_04596449 GPR12 coding upstream 6690 4594465 ~ 4597587 (-)
CI01000018_04604468_04611851 USP12.S, USP46, USP12, USP12.L, RGD1561481, USP12A, USP12-LIKE coding upstream 16012 4603787 ~ 4611851 (-)
CI01000018_04627321_04645724 LNX2A, LNX2 coding upstream 39394 4627169 ~ 4646182 (-)
CI01000018_04657706_04674073 NA coding upstream 69796 4657571 ~ 4674073 (-)
CI01000018_04738374_04757471 NA coding upstream 150505 4738280 ~ 4757471 (-)
G105307 NA non-coding downstream 130150 4454261 ~ 4454478 (-)
G105306 NA non-coding downstream 139261 4444802 ~ 4445367 (-)
G105304 NA non-coding downstream 152146 4432191 ~ 4432482 (-)
G105277 NA non-coding downstream 298636 4285739 ~ 4285992 (-)
G105185 NA non-coding downstream 346493 4234605 ~ 4238135 (-)
G105199 NA non-coding upstream 24922 4612697 ~ 4615380 (-)
G105328 NA non-coding upstream 33576 4621351 ~ 4621628 (-)
G105209 NA non-coding upstream 62106 4649881 ~ 4651347 (-)
G105336 NA non-coding upstream 153886 4741661 ~ 4741921 (-)
G105350 NA non-coding upstream 179836 4767611 ~ 4768386 (-)
G105200 NA other downstream 338618 4243467 ~ 4246010 (-)
G105104 NA other downstream 566811 4007697 ~ 4017817 (-)
G104968 NA other downstream 1084114 3482104 ~ 3500514 (-)
CI01000018_02389202_02488018 CNTNAP2, CNTNAP2A other downstream 2183725 2389201 ~ 2488018 (-)
G103842 NA other downstream 2624570 1959497 ~ 1960058 (-)
CI01000018_04856240_04875704 DAP other upstream 267306 4855081 ~ 4876532 (-)
CI01000018_06021105_06025859 NA other upstream 1303561 6020861 ~ 6025876 (-)
G106538 NA other upstream 1942672 6530447 ~ 6533512 (-)
CI01000018_06639339_06649926 NA other upstream 2052837 6639207 ~ 6649971 (-)

Expression


Co-expression Network