XLOC_008111 (ganab)


Basic Information

Item Value
gene id XLOC_008111
gene name ganab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 45514469 ~ 45551572 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015829
AACGCTGTGTGTCCAAGATGGCGGCTAACTCCATTGAAAGGATGGGGCTGCTGTCTGTGCTCTGTGTGTCGCTGTTTTTCAGCAGCACCTTTGCTGTGGATCGGGGAAGCTTTAAAACTTGTGATCAGAGTTCCTTCTGCAAACGTCAGCGGACGCTCAAACCCGGTCAGTCCCCATATCGAGCTCTTCTGGACACTTTGGAGCTCAGTGACTCCCGACTGACCCTCCAGCTCATCAATGATAACAACAAGGTTCACTTGCTGCTGGAGCTCTACAGACTGCAGGGTAATATGACACGGGTGAAGATAAATGAGCTGAAGCCTCTGAAGCCGCGCTTTGAGGTGCCAGACGTGCTCATAGCAGATCCTCCGACTGAGCCTCTCTCTGTGCTGTCTCAGGATGATAATGGCCTTGTGTTATCTCTGGGAGCCGAGAGTCAGAGGCTGATTGTGAGCGCTCGTCCATTTCGGCTGGACATCATGGAGGGGCCGGAGGTGCTGCTGTCCCTCAACTCTCGCGGCCTGCTAGCCTTTGAGCATCTGCGGCTACGCAAGGACACGCAAGCTCAACCAGACGGTGCTGAAGTTAAAGAAAGCACAGAAGCAGATCAACAGCAAGCTGAAGGAGAGAAGGATGAAGATGGAGAGAATGATAAAGACGAAGACGGTCTGTGGGATGAGTCATTTAAAGCTCATGCGGATACCAAACCAAACGGCCCGACATCAATAAGTTTAGACTTCTCTTTGCCGGGTGTTGAACATGTATACGGTATACCAGAGCATGCAGACAACCTAAAGCTCAAAACTACAGATGGTGGTGATCCATACAGGTTGTATAACCTAGATGTGTTTCAGTATGAGCTCTATAACCCTATGGCCTTATATGGATCCGTACCTGTCATGATTGCCCATAACACGCAGAGAACCATGGGTATTTTCTGGCTTAATGCGGCTGAGACCTGGGTGGACATCAGTTCTAATACAGCTGGAAAGACTGTGTTTGGTAAGATGCTGGACTTTGTTCAAGGCTCCAGTGAGACGCCACAGACAGACGTCCGCTGGATCTCTGAGAGTGGCATCATTGATGTTTTTATCATGCTCGGGCCCAAACCATCAGATGTTTTCTCTCAGTACGCCTCTCTCACAGGCACGCAGTCTTTCCCTCCCCTCGCCAGTCTGGCGTATCACCAGTGCCGCTGGAATTACAATGACCAGGACGATGTGAAGTCTGTGGATGAGGGCTTTGACCAGCATGACATCCCTTATGACTTCATCTGGCTGGACATCGAGCATGCAGACGGCAAGCGCTACTTCACCTGGGATCCACACAAGTTCCCTGAGCCGAAAGAGATGCTGCAGGGCCTGATGGAAAAGAGACGCAAGATGGTGGCTATAGTTGATCCCCATATCAAGGTGGACAGTGACTACAAGATCCACAATGAGATCACCAATAAAGACTTCTACGTTAAGAACAGTGATGGTAGAAATTATGAAGGCTGGTGCTGGCCAGGAAACTCTGGCTATCCAGACTTTACCAATCCAGAAATGCGGGCCTGGTGGGCCAGTATGTTCTCTTACGATCAATACGAGGGCTCAATGGAGAACCTTTTCACCTGGAATGACATGAACGAGCCGTCCGTGTTTAATGGCCCTGAAATCACGATGCATAAAGATGCTATACATGGAAAATGGGAACACAGAGACGTACACAATATCTATGGACTTTATGTGcAAAAGGCCACTGCTGAAGGTCAGATTCAGCGATCTGGTGGAGTTGAAAGGCCCTTTGTGTTAACCAGAGCATTTTTTGCTGGCTCTCAGAGATACGGTGCCGTCTGGACTGGTGATAATGCAGCTGATTGGGGTCATCTCAAGATTTCTATTCCCATGTGTCTCAGTCTGGGGCTTGTGGGCATCTCATTTTGTGGAGctgatgttGGTGGCTTTTTTAACAATCCCAGCACTGAGCTTCTGGTTCGCTGGTATCAGACTGGTGCGTATCAGCCGTTCTTCCGTGCTCATGCTCATCTGGACACCACACGCAGGGAGCCCTGGCTCTTTGGCCCAGAAAACACAGCACTCATCCGGGAAGCCATCCGCCAGCGTTACGCCCTCCTGCCCTACTGGTACCAGCTGATCTACCAAGCACACACCACCGGGATGCCAGTCATGAGACCTCTCTGGGTTGATTATCCTAAGGAAACGGCAACTTTCACCATTGATGATGAATTCCTAATTGGAAGGGATCTGTTGGTTCATCCGGTCACTGAGGAAGGGTCTCGTGGAGTCACAGCTTATCTGCCTGGAGCCGGAGAGGTTTGGTATGACGTCCACACCTTTCAGAAACACAATGGTGCCCAGAATCTCTACATCCCAGTCACTCTTAGCTCTATCCCAGTTTTCCAGCGTGGCGGCTCCATCATTCCTAGGAAGGACCGAATTCGCCGCTCATCAGCCTGCATGGAAAATGACCCCTACACCTTATATGTGGCTCTTAGTCCTAAGAAATTTGCTGAAGGCGAGCTCTACATTGATGATGGTCATAGTTTTAACTATGATACCAAGTCAGAATTTATTCACCGGAAACTCACTTTTGCCAATAATTCTCTCACTTCACGTAACCTGTGCCCAGACTGCAAGTTCTCAACTTCGTCATGGGTTGAGAAAGTTGTCATTTTGGGTGCCAGCAAGCCCAGAAAGGTTCTTCTTAAAGTGGATGGAAAAGAAACACCTGTGGAGTTTGAGTTTGACGCCTCCATGTCGGTGCTGACCCTCCGCAAACCTGGGATAAACGCAGGCATGGACTGGACAATCCTGCTTCAGTCACAGCGAAATGATCTATAAAACAAAATCACCctccaaaaaaactaaacaatcaaAAGTTTCACTCTTAATTCATAAACACATCCAGCACTTACAAAACCTTCATGACAACTCAGAAGCAGGCTAGAGGTGCGACGGGTCAGAGAGATTTTTGGCAGGGTCAGAcagtaaatgctttattttttaatgtagtaACCTCATTCACAAGTCAAgagtttgtgtttttaatgtcATGTGGTGATGAAGTAGTGATTAACCGAATAATGCATTGGATTTAAATCATTTCAGGATGGCAAATGAGACCAATGTTAATAATGAACAAGGACGCATCAGGATCAGAAAGCTTTGTTTGTTGTTAGTTATGTCATTTTTAAAGCTCTAGAAATGGAGACATTTGCACTTCAGGGGTTTTAGAAACCACTAATGAGCTTTATTGCTTATGGTGGCCTAGTTAGTTCATTTGACGGGGGGTCTTGGGTTTGGATTTTGCTTTACTGGGGAATTCGCCTgttaaatctgtgattttcaaCTTTGATTTTTacctctctttttttcttttctagagCAGTGTTTtccaactctgttcctggaggcacactaacagtacatattttagatgtgtcccttatctgacccattcatttgaGGTTATAGAGTTACTTCTGATGTTCTCATGAGTTGATtgtggtgtgtttaattagggagaggttgaaaatgtgtactgttggtgtgccttcaggaacatggttgggaAACAGCACTTacatttgttgggtttagggtgggttGGGTGTTGTATGTTTAGAAACGGCAAAGCAGAACGAAACAGGCAGGCATTTAGAAGTATTTGAGCCTAATCTACTGTAATGGGGAAGTTAATGTTAATGCCATCCACTGTTAATTTGATATCTTGTCAGAATGACTGAAGTAAATGTGTGTTTAAGGCAAGGCCTCTGATGAAGAACATTCCTGCTTGATCATCATCGTTTATCATCAAATGCTTCGTATTGCTGATTTTCCAActtgtttcattcattttttttttgtttgagtgtGACCCTGAAAGCTCTGAAACgctcaagtaaatgtaacgtcTTTGGCTTTTGAGGAATGGGAGTTCAAATGGGATGGAAATAAAGATTAAGTGTACATTCCTga

Function

symbol description
ganab Enables glucan 1,3-alpha-glucosidase activity. Involved in N-glycan processing. Located in intracellular membrane-bounded organelle. Part of glucosidase II complex. Implicated in polycystic kidney disease; polycystic kidney disease 3; and polycystic liver disease.

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-110930-9 Predicted to enable glucan 1,3-alpha-glucosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be part of glucosidase II complex. Human ortholog(s) of this gene implicated in polycystic kidney disease; polycystic kidney disease 3; and polycystic liver disease. Orthologous to human GANAB (glucosidase II alpha subunit).

Ensembl:

ensembl_id ENSDARG00000076811

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015829 True 3980 mRNA 0.46 24 45514469 45551572
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Neighbor

gene id symbol gene type direction distance location
XLOC_008110 si:ch211-114c17.1 coding downstream 1662 45488922 ~ 45512807 (-)
XLOC_008109 dre-mir-194b coding downstream 45438 45468955 ~ 45469031 (-)
XLOC_008108 ehd1a coding downstream 50357 45434680 ~ 45464112 (-)
XLOC_008107 si:ch211-168f7.5 coding downstream 119630 45365157 ~ 45394839 (-)
XLOC_008106 zgc:153018 coding downstream 167911 45339986 ~ 45346558 (-)
XLOC_008112 ints5 coding upstream 421 45551993 ~ 45558490 (-)
XLOC_008113 scyl1 coding upstream 23463 45575035 ~ 45595732 (-)
XLOC_008114 si:ch211-276i12.9 coding upstream 52167 45603739 ~ 45604667 (-)
XLOC_008115 NA coding upstream 78959 45630531 ~ 45639806 (-)
XLOC_008116 si:dkey-226n24.1 coding upstream 147307 45698879 ~ 45702721 (-)
XLOC_007641 CU855896.1 misc downstream 43106629 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 43107038 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 43107397 2406945 ~ 2407072 (-)
XLOC_008104 NA non-coding downstream 537395 44975416 ~ 44977074 (-)
XLOC_008100 CABZ01078505.1 non-coding downstream 997321 44517029 ~ 44517148 (-)
XLOC_008099 CT998554.1 non-coding downstream 1237864 44276488 ~ 44276605 (-)
XLOC_008098 NA non-coding downstream 1845324 43667449 ~ 43669145 (-)
XLOC_008118 NA non-coding upstream 492297 46043869 ~ 46045904 (-)
XLOC_008121 NA non-coding upstream 563088 46114660 ~ 46117359 (-)
XLOC_008131 NA non-coding upstream 881910 46433482 ~ 46437896 (-)
XLOC_008135 NA non-coding upstream 950307 46501879 ~ 46502192 (-)

Expression

Expression of XLOC_008111(ganab) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Expression of XLOC_008111(ganab) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_05728315_05737603 GANAB coding CI01000000 null 5728315 ~ 5737679 (+)