XLOC_008119 (elf2a)


Basic Information

Item Value
gene id XLOC_008119
gene name elf2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 46047761 ~ 46070802 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015840
GCAGTTCGTCATTCAGATCCTGCTAACGGGAGGCCCGAAACCAGCAACGCAAAACATCACTTACAACACCAACTCGGACGGCTAAAACTAAAATCTTTTTGCATCCTACATTTGACTAAATAGACGTCTGTCTATCGCCTGCATGCGTGCGCTTTATCAGCGAGCGTTTCTGGCAAGTTGAGCAGCTTTAACGTCAATCTGTCATTAGCATTGTTAGCATGCTAACCTTATGACAGAGTAAACTCGGCTGTTCTGAGCTGCACCAAACGACTGGAAATCAACACAAACGACTGACGTCACTGTAGGTCATCAGCAGGGGCGCAGGGCACAAGAGAGGGTCTCACACAGAGGAATGAGTCATGACCTCTGTGGTGATCGTAGATGGTGGAGGGAATATATTGGAGTATGTCACCGCAGATGAAGAAGCACAGCAGgAGGTTTGCCCTGATGGGGAGGAGTCTTATGGAGAGAAGGACTGTCCTGCGGTGATAGTGGAGCAGGTGAACAGCGCTGATGTGGAGCAGTGCTATGCTGCTCAGGTGTTGGTCTATGATGACCAGAACACCTACCTGGTCCAGGATGTGGCAGAGGAGCAAGTTGTGGAGACTGAGCTGCAGGAGATGGCAGCAGTGGAGGTCTCAGTGCATGATAAGACTATTGAAGCAGCTGAAGCTCTGCTCCACATGGATTCACCTGCCAGCTTACAAGGGGACCGCAGTACAGAGGAGCTTTTGTCAGAGGTGGAGGTGGAGGTGAGAACTGAGGACATGGGACCAGTTGCTAAGGATATTATTGTCCTGCAGGAAGCAGATTcactgaagaagaaaaagagagCAGGACGAAAACCCAGGACTCCACGAAATTGCTGTGATGGTTCTTTAGATTTGGTCTATAAAAGGAAATCTAAAGACAGCAAGGGCTCGACTACTTACCTGTGGGAGTTCCTGTTGGACCTGCTGCAGGACAAGGAAACGTGTCCAAAGTACATTAAGTGGACTCAGAAGGAGAAAGGCATATTCAAGCTTGTGGACTCTAAAGCAGTGTCTAAATTATGGGGCAGACATAAGAATAAACCTGATATGAACTATGAGACAATGGGGAGAGCACTCAGGTATTACTACCAGCGGGGCATTTTGTCAAAAGTGGAAGGCCAAAGACTTGTGTACCAGTTTAAGGAGATGCCCAAAGACATTGTTTTCATTGATGACGACAATATGGATGACAGCATTGAAGAGGGAAAGCGAGAAACTCCAGCCGCATCCAACCGCAGCAATCCAAGAGGCAAAGGGTCTCCCTCTAATGCTGTTCCTAAAATTATCAATCTAACCTCAGGACAAGATGCCTTTATGACCGTGCAACAATCGGGAGACAGCATATCAGCAGCCCCTGGGACTGTGAGGCTGGCCATGCAGGTTCCTGTCCTCATGACGACACAGGGTCAGAAAATCTCCACAGTGACTATGAACTCTCCCACCGTCCGCTCGCCGATCCTCCCCGCGCCAAACTCCATCAGCGGCGGCAACAGCGCAGGCAAAGTGCTTCTCCAAGCCGTCCCGACGCTAGTGCCTGCTCAAGGACAGAGCGGAGAGAGGATCACCCTACAGCTCATCACCCTTCCCACAATGCCCGGCAAACCCGGCACTCCCATCACCCTGAGCGCCCTCTCGCCCCTCACCGTGCCTACCAGCAACACCCAAGTCCTGAAGCTCGCCATCCCGTCTAGCATCATCACCACTCCGGCCTCCACGGCTCCAGTAACAGTGGTGTCCTCGCAGCCGGCAGTGACCGTAGTGCCCAGCGTGCAGCCAGCCATGTCTCTACATGACGTGACTATCATTAAAGTCGAACCTCCGGAGGTTTCCGTGGATCAGGAGAAAACACAGACGAACACCACACAGAGCTGAACGAACTGCACGCATCACTTGATGTAACAGAGCGTCTGTTTCTGATGTGAAACCAGCACTACAGCTCAAGCGCTTGTTCACGCACAACACTATAACCACCGCGTGTAGCCTGGATTagacttctttttttatttcttttcttttattttataatctGGTTAATTTGCGCTTCGTTATTGCCGACCATCTGCGCTGTGATGCTGAAGGAATGAACTTCATTTGGTGCTAAAGACTGAAAGAGTGGCACGGGTGAAGAGAACAGCCGTGATGTGTTTCGGGAGCGTAAACGAATCTGTGCATAGACATACCTTTATGCGGTAGTTTATGATCAATACAACAAGCAGCCTTAGGTCAGCTTTTTCTTCCCAAGTCATTACTGAAAGTAAATGATTGCTCTTTTTGATTGTGTAAATAGTCATTTCTTTGCTTTTGATATTTTATACCtggaagttttgtttttttacagttgaaAGGAAACTGTTTTCTGAAGGAcgttaaatctgttttgttttgtcatttcagaccttttaaaataatttgcgtTGTGCATTTATCACTGTATGCGTTTTCTGTATCGTGCATCCACTGCTTTGTATTTTGCagatcattttttgttttttcatgtgtACAAAAAAAGGGAAAGAATGTCTGATTACAGTATATTGAATATTCAATATATGAAGCATATATTTTGTTGTATTCTTACCCTAAAAAAATGTATCCAAGTAGATTTAAATATAGAGAATTATGCAAACAA

Function

symbol description
elf2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human ELF2 (E74 like ETS transcription factor 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-41 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human ELF2 (E74 like ETS transcription factor 2).

Ensembl:

ensembl_id ENSDARG00000019459

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015840 True 2661 mRNA 0.47 9 46047761 46070802

Neighbor

gene id symbol gene type direction distance location
XLOC_008118 NA coding downstream 1857 46043869 ~ 46045904 (-)
XLOC_008117 macrod1 coding downstream 79780 45789454 ~ 45967981 (-)
XLOC_008116 si:dkey-226n24.1 coding downstream 345040 45698879 ~ 45702721 (-)
XLOC_008115 NA coding downstream 407955 45630531 ~ 45639806 (-)
XLOC_008114 si:ch211-276i12.9 coding downstream 443094 45603739 ~ 45604667 (-)
XLOC_008120 NA coding upstream 3509 46074311 ~ 46113404 (-)
XLOC_008121 NA coding upstream 43858 46114660 ~ 46117359 (-)
XLOC_008122 mlsl coding upstream 86577 46157379 ~ 46173265 (-)
XLOC_008123 zgc:113425 coding upstream 120005 46190807 ~ 46198373 (-)
XLOC_008124 setd7 coding upstream 129139 46199941 ~ 46213571 (-)
XLOC_007641 CU855896.1 misc downstream 43639921 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 43640330 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 43640689 2406945 ~ 2407072 (-)
XLOC_008109 dre-mir-194b non-coding downstream 578730 45468955 ~ 45469031 (-)
XLOC_008104 NA non-coding downstream 1070687 44975416 ~ 44977074 (-)
XLOC_008100 CABZ01078505.1 non-coding downstream 1530613 44517029 ~ 44517148 (-)
XLOC_008131 NA non-coding upstream 362680 46433482 ~ 46437896 (-)
XLOC_008135 NA non-coding upstream 431077 46501879 ~ 46502192 (-)
XLOC_008136 NA non-coding upstream 460117 46530919 ~ 46533561 (-)
XLOC_008137 NA non-coding upstream 559099 46629901 ~ 46675850 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_05509066_05523921 ELF2A, ELF2 coding CI01000000 null 5509066 ~ 5523987 (+)