XLOC_008123 (zgc:113425)


Basic Information

Item Value
gene id XLOC_008123
gene name zgc:113425
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 46190807 ~ 46198373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015847
AGTATTAAACAACTGGCTGTAATCATGCACGCACAGAGAGGGAGGGCGTGACCATCCTGCTGCACCTGCGCGCGCCCGCCAGGTAAATGAGTGACACGCTGGGTTTCAGAGCTTGCTTCTAAACAAAAGCGGTCCGGAAGTGAAAAAGGAAAAACGGCAGAGAGACCTGGGATGGACCGTTACAGGTATTTCATCTTCAACCAGAAGAGTGTGGTGGTGCTGGGCATCCTTCAGGTGGCGTGCGCGGGGCTCTGCGTGGTTTGCGGCTTTATGGATGCGGTTTTCCGCAAGAGCACTACTCTCAGTGAGACCAGGGCTCCACTATGGGCTGGATTGATCATGGCTGCCCCTGGTGTACTTGCCCTTTTTGCGTCACAAAAGAAAAACCCTTATTTGGTAAACGTGATGATCGTGTCCTCCGTGGTGTCGCTTTTTGCTGTTGTGATCGTCTTCGTTTACGCCTGCGTCACTCTCAGCTATGGAGAGGAGGATGATGAGATCTTCCACGCCCATCCGGTTCCTGAAGTGAGGTTTGTCCTGAGCCGGATGGTGAAAGGAGCAAACTGCACCCTCCTGGTGGCCTGCACAGGATCTCTGCTCTTTTCTTCTCTTATTGCGTACATCGGATGCCGCAGCTTGCCGCTTTGTGGCTGTTATGACTCTGCAAATGGCATGGAGTTTCTAGCTCCTCACAACGATCCTGTCAGTCCAACTGAACTTGTATGCACTTGGCAAGACGGAGACGAGCGAATCTTTAACTCCCCTGTGTCATTCATGGATCGTTGTCCCGAACAGGAACAGCAAGAGCTATCAATATGTCCTCCATATAGCAGATTAGCTtagtatttttattgtatataaatattttaatgtgtgTGAAATAGATTACATTAATTTCTAAAGTGAATTTGACATTTCATTAAGCTTGCTTGTTTTAATTCTGCTTGAATGTTTGttgatgttttgttattattagtgcCATATTAGTGCCTTTGCTTAAGTTTTATATGATAGACTGatatttttgcatatttaaacttgtgtaaatatatattttacaataaacaacCTATAAATC
>TCONS_00015846
AGTATTAAACAACTGGCTGTAATCATGCACGCACAGAGAGGGAGGGCGTGACCATCCTGCTGCACCTGCGCGCGCCCGCCAGGTAAATGAGTGACACGCTGGGTTTCAGAGCTTGCTTCTAAACAAAAGCGGTCCGGAAGTGAAAAAGGAAAAACGGCAGAGGTAAATACGGATTTAGCTTGAATTTACAGCAATTATACATCACTTATAACCAATAAGAACTATATAGTAAATCAGAAGAGTGGCTTTAAGAGACCTGGGATGGACCGTTACAGGTATTTCATCTTCAACCAGAAGAGTGTGGTGGTGCTGGGCATCCTTCAGGTGGCGTGCGCGGGGCTCTGCGTGGTTTGCGGCTTTATGGATGCGGTTTTCCGCAAGAGCACTACTCTCAGTGAGACCAGGGCTCCACTATGGGCTGGATTGATCATGGCTGCCCCTGGTGTACTTGCCCTTTTTGCGTCACAAAAGAAAAACCCTTATTTGGTAAACGTGATGATCGTGTCCTCCGTGGTGTCGCTTTTTGCTGTTGTGATCGTCTTCGTTTACGCCTGCGTCACTCTCAGCTATGGAGAGGAGGATGATGAGATCTTCCACGCCCATCCGGTTCCTGAAGTGAGGTTTGTCCTGAGCCGGATGGTGAAAGGAGCAAACTGCACCCTCCTGGTGGCCTGCACAGGATCTCTGCTCTTTTCTTCTCTTATTGCGTACATCGGATGCCGCAGCTTGCCGCTTTGTGGCTGTTATGACTCTGCAAATGGCATGGAGTTTCTAGCTCCTCACAACGATCCTGTCAGTCCAACTGAACTTGTATGCACTTGGCAAGACGGAGACGAGCGAATCTTTAACTCCCCTGTGTCATTCATGGATCGTTGTCCCGAACAGGAACAGCAAGAGCTATCAATATGTCCTCCATATAGCAGATTAGCTtagtatttttattgtatataaatattttaatgtgtgTGAAATAGATTACATTAATTTCTAAAGTGAATTTGACATTTCATTAAGCTTGCTTGTTTTAATTCTGCTTGAATGTTTGttgatgttttgttattattagtgcCATATTAGTGCCTTTGCTTAAGTTTTATATGATAGACTGatatttttgcatatttaaacttgtgtaaatatatattttacaataaacaacCTATAAATC

Function

symbol description
zgc:113425 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-128 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000026616

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015847 False 1078 mRNA 0.45 7 46190807 46198373
TCONS_00015846 True 1168 mRNA 0.44 7 46190807 46198373

Neighbor

gene id symbol gene type direction distance location
XLOC_008122 mlsl coding downstream 17542 46157379 ~ 46173265 (-)
XLOC_008121 NA coding downstream 73448 46114660 ~ 46117359 (-)
XLOC_008120 NA coding downstream 77403 46074311 ~ 46113404 (-)
XLOC_008119 elf2a coding downstream 120005 46047761 ~ 46070802 (-)
XLOC_008118 NA coding downstream 144903 46043869 ~ 46045904 (-)
XLOC_008124 setd7 coding upstream 1568 46199941 ~ 46213571 (-)
XLOC_008125 si:ch211-113d11.5 coding upstream 22631 46221004 ~ 46228094 (-)
XLOC_008126 si:ch211-113d11.6 coding upstream 35331 46233704 ~ 46238186 (-)
XLOC_008127 si:ch211-113d11.8 coding upstream 52491 46250864 ~ 46259523 (-)
XLOC_008128 crybb1l1 coding upstream 103600 46301973 ~ 46310549 (-)
XLOC_007641 CU855896.1 misc downstream 43782967 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 43783376 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 43783735 2406945 ~ 2407072 (-)
XLOC_008115 NA non-coding downstream 551001 45630531 ~ 45639806 (-)
XLOC_008109 dre-mir-194b non-coding downstream 721776 45468955 ~ 45469031 (-)
XLOC_008104 NA non-coding downstream 1213733 44975416 ~ 44977074 (-)
XLOC_008131 NA non-coding upstream 235109 46433482 ~ 46437896 (-)
XLOC_008135 NA non-coding upstream 303506 46501879 ~ 46502192 (-)
XLOC_008136 NA non-coding upstream 332546 46530919 ~ 46533561 (-)
XLOC_008137 NA non-coding upstream 431528 46629901 ~ 46675850 (-)
XLOC_008145 CABZ01080059.1 non-coding upstream 2151114 48349487 ~ 48349602 (-)

Expression


Co-expression Network