XLOC_008131


Basic Information

Item Value
gene id XLOC_008131
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 46433482 ~ 46437896 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016481
cgaGCTAGACCAACCGTCAGGTAAAGAGGCTTCAGAAAAGATGTTTATATGGCTGTTAATAAATATCTtgccaactggaaaatattttaattaccttatccgtgttatatttcatctgcaacaacattTCTATAAAGacatgtttggacattaacttctgaatgcattatccaaagacctgaggataTTTcgctgcatgaaagactcgtgaatgggagattggcctgctgctgcttctccaataagGTCCTGTGTATGTGCCGGCAGGGGTCTCCATGTGGACTGATGTGGCCTGATTTCACACCCTCACATCTGAGCTCTGATTGGCCGAAACAATGACCCTAATACACTGCATCCAGGAAATAGTAGAGCAGAGCCTTCTGGTAATCTCCATCAGTGTcttcctgaaaacacacacaaaagcacatgctgagCTCTGATGTCCAGCATGTCCCTTTCACTCCTGGACACCATGATGCGTATGAGAGTCTCGTCGTCAGTGCCGGCACGCTGTAAACAAAccacacacatcatcatcatcatcatcatgcagAACAACACTTTCACTTAACTTAGCGAATGATCTCCTTCATGGATGAGTTAATATAAGATGGAAATAAAGCTTCGTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016481 True 630 lncRNA 0.43 4 46433482 46437896

Neighbor

gene id symbol gene type direction distance location
XLOC_008130 bbs7 coding downstream 37823 46375241 ~ 46395659 (-)
XLOC_008129 ccna2 coding downstream 58612 46354648 ~ 46374870 (-)
XLOC_008128 crybb1l1 coding downstream 122933 46301973 ~ 46310549 (-)
XLOC_008127 si:ch211-113d11.8 coding downstream 173959 46250864 ~ 46259523 (-)
XLOC_008126 si:ch211-113d11.6 coding downstream 195296 46233704 ~ 46238186 (-)
XLOC_008132 fgfbp1b coding upstream 3721 46441617 ~ 46442459 (-)
XLOC_008133 fgfbp2a coding upstream 11174 46449070 ~ 46451249 (-)
XLOC_008134 prom1a coding upstream 18195 46456091 ~ 46617228 (-)
XLOC_008135 NA coding upstream 63983 46501879 ~ 46502192 (-)
XLOC_008136 NA coding upstream 93023 46530919 ~ 46533561 (-)
XLOC_007641 CU855896.1 misc downstream 44025642 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 44026051 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 44026410 2406945 ~ 2407072 (-)
XLOC_008121 NA non-coding downstream 316123 46114660 ~ 46117359 (-)
XLOC_008118 NA non-coding downstream 387578 46043869 ~ 46045904 (-)
XLOC_008115 NA non-coding downstream 793676 45630531 ~ 45639806 (-)
XLOC_008109 dre-mir-194b non-coding downstream 964451 45468955 ~ 45469031 (-)
XLOC_008104 NA non-coding downstream 1456408 44975416 ~ 44977074 (-)
XLOC_008137 NA non-coding upstream 192005 46629901 ~ 46675850 (-)
XLOC_008145 CABZ01080059.1 non-coding upstream 1911591 48349487 ~ 48349602 (-)
XLOC_008146 CR376827.1 non-coding upstream 2138688 48576584 ~ 48576700 (-)

Expression


Co-expression Network