XLOC_008136


Basic Information

Item Value
gene id XLOC_008136
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 46530919 ~ 46533561 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016483
ATTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAGGAATTCAACCAGATAGTTAACAAAAATTATATTGGTCTCTTGATCATCACTGCCCACAACTGATTCAGATCTTCAGATGTTCAGGTCACAGAGAGGTCTCACTGGACAGATTTTTATCTACTACAAGATGTCAAGGCCTCTGACCTCACTGACATGCGAGGTGTTTTCATTTGAGTGCTTCCAGTAGTTTGAAGCAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATATGCTCGTTGGAATTCTTAACCGAGAAAATGACGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATCCCCTGTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGATTCTGGCGTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACTGTGagttaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCGATAATACTACAATGTAATAATGTCTTGTGGTTGTTTATtatttggatatgtttgtaaaaatttattgaaatattttaaacaagtgttttaataagatttataacaataaatatcGACAAATTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTCGGAGTGATATTTCTAAATggttttaagtaaagtaaattattattCTTTGTCCTTGCTTGTAATTAGGGGTATTTTCATTAAATCAGTTATAGTGAATAGct
>TCONS_00016484
GTTATCCCTAAAGTTGTATTAATTCAAAATACTTAGATTCAATAAACATAAATTCCAACTTTTTTGCTCAGTTACTCAATTTGTTTAGTTTGTTGTACGATTTGCATGACATTTTTGATTCTACTGGATTGTTTAAATTGAATGTACTTAACAGAGCTTGTTTTAGTCTCTTGTCAAAGGAGTGATGTGTAAGGGGAAATGTGATTGGCTCTTTGTCTTTGGGCTGACGTCACTGGTGAACACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTGTGAGTACGATTTCATACTTTTGTCTCAAACAATCCACATTGTTTTCCATTAATAAACAAAGTATGTAACCGTTAGCAAGAAAACCACATGTAAGATTAAACTGTGTTTGACGTTAGGATGTTATTGTTCCGGTCAATCGCAACCGCCATCGCCACATTTATATACAGCTCTAAGACGTGAAAAGTGCAAAGACGTGCGTAATAGGATCATGATATCGAtcatatattatgtaaaatagTTCATGTAAGTTTTGCCTGTGTTAGCGTGTTCATTTATGCCACGTTATAACCGATTGCGGCTGTAACTAACGTTACAGTTGCTGTACGTGAAAACATGCTTTATGAGGTCGTCACATATAAAGTTTAATATTGATGCTGTATTCGATGAGTCATCCGCATTATCTGTTgtgtaaaatgattatttttgcaGTGGTGGTTATGCATCGTCAGATGTTTAGCGTAACATTAACCTGAGCTGTTTTAAACGGTTTTTTTTTGTAAGTGAAGTATTAACAGACTAGAATACATTGAGATTTGCCCTTTTCTTCGGAAATACGAATTCATGTTAGTTGGCATTTTTTGAAAGATATGCAACCTCGTGCTCATCAGTCTTAGCAAGTGAATTTTCAGTTAATTAGAATGAAAGCTACATAAATAATTAACTAGCTTTATAATTCTTTTGGTTAACAATAGCTGTTTGTGGGAAATTTGGAGATAACAGatcaaaatatgtaaatgtgttttgtcagctagtaatctaatgtatatttttgtgaCTGTAGATTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTAAGTATTGCTCATTTGCTTGTAACAAAATATGATACTTATTAAAACATTGCAGATTTAAACATGGGAGCTATGCAAGAAGCCAGCCATTTCCATGCATATATCAGGAATGTATTTGTAATGAAATGAGTACAGTATTGATACACATGATAGCATGCTAGTTtgacagttgtttaattttgacatttctcTGATGTTAAtgaacttttttgtgtgttttactaCTACAGGTGTATCAGGAATTCAACCAGATAGTTAACAAAAATTATATTGGTCTCTTGATCATCACTGCCCACAACTGATTCAGATCTTCAGATGTTCAGGTCACAGAGAGGTCTCACTGGACAGATTTTTATCTACTACAAGATGTCAAGGTTTGTGTATGCCATTGTTTGTACATGCCATTGATATAAATTGATGCCATTGTGTGCTGAATTTTGAAATTGATATAATTACTTTAGAAATGCTCAGTAACAGAGACTAAATTATGATACATGAAAATGCACTTTCTCTCATGTTGACAAATGATATAATGTTGTTTCTCTGCAACACCTCAGGCCTCTGACCTCACTGACATGCGAGGTGTTTTCATTTGAGTGCTTCCAGTAGTTTGAAGCAGTTCTTCAAAGCATGTTTTGTAAGTATCATTAATAAAATCTTTAGTAATTTAATTATATCAAATCTTTTTATGCCGTATGCAATGActtgtatacaaaaaaaaaaacaatttaatattttgtagtatttttatatatcattGAATACTAGATATGCTTGGGTATACAATTAACAATTTATGCTTGCATACaactaaaaaacattaaatacaattcatatatattaaaatcaaatgtaCACCTCTAAGatatatttatgttatctatgTATTGTTGTCAGGCTTCAGATGATGGAGACTCAAATCAACATATGCTCGTTGGAATTCTTAACCGAGAAAATGACGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATCCCCTGTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGATTCTGGCGTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACTGTGagttaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCGATAATACTACAATGTAATAATGTCTTGTGGTTGTTTATtatttggatatgtttgtaaaaatttattgaaatattttaaacaagtgttttaataagatttataacaataaatatcGACAAATTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTCGGAGTGATATTTCTAAATggttttaagtaaagtaaattattattCTTTGTCCTTGCTTGTAATTAGGGGTATTTTCATTAAATCAGTTATAGTGAATAGct
>TCONS_00015872
GGCTGACGTCACTGGTGAACACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTATTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAGGAATTCAACCAGATAGTTAACAAAAATTATATTGGTCTCTTGATCATCACTGCCCACAACTGATTCAGATCTTCAGATGTTCAGGTCACAGAGAGGTCTCACTGGACAGATTTTTATCTACTACAAGATGTCAAGGCCTCTGACCTCACTGACATGCGAGGTGTTTTCATTTGAGTGCTTCCAGTAGTTTGAAGCAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATATGCTCGTTGGAATTCTTAACCGAGAAAATGACGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATCCCCTGTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGATTCTGGCGTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACTGTGagttaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCGATAATACTACAATGTAATAATGTCTTGTGGTTGTTTATtatttggatatgtttgtaaaaatttattgaaatattttaaacaagtgttttaataagatttataacaataaatatcGACAAATTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTCGGAGTGATATTTCTAAATggttttaagtaaagtaaattattatt

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006457 protein folding biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000098535

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016483 False 908 lncRNA 0.36 4 46530919 46532499
TCONS_00016484 False 2643 lncRNA 0.33 1 46530919 46533561
TCONS_00015872 True 910 lncRNA 0.38 5 46530976 46533340

Neighbor

gene id symbol gene type direction distance location
XLOC_008135 NA coding downstream 28727 46501879 ~ 46502192 (-)
XLOC_008133 fgfbp2a coding downstream 79670 46449070 ~ 46451249 (-)
XLOC_008132 fgfbp1b coding downstream 88460 46441617 ~ 46442459 (-)
XLOC_008131 NA coding downstream 93023 46433482 ~ 46437896 (-)
XLOC_008130 bbs7 coding downstream 135260 46375241 ~ 46395659 (-)
XLOC_008137 NA coding upstream 96340 46629901 ~ 46675850 (-)
XLOC_008138 ldb2a coding upstream 145150 46678711 ~ 46832825 (-)
XLOC_008139 qdpra coding upstream 339668 46873229 ~ 46897067 (-)
XLOC_008140 fstl5 coding upstream 466790 47000351 ~ 47391084 (-)
XLOC_008141 rapgef2 coding upstream 1246285 47779846 ~ 48033073 (-)
XLOC_007641 CU855896.1 misc downstream 44123079 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 44123488 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 44123847 2406945 ~ 2407072 (-)
XLOC_008121 NA non-coding downstream 413560 46114660 ~ 46117359 (-)
XLOC_008118 NA non-coding downstream 485015 46043869 ~ 46045904 (-)
XLOC_008115 NA non-coding downstream 891113 45630531 ~ 45639806 (-)
XLOC_008145 CABZ01080059.1 non-coding upstream 1815926 48349487 ~ 48349602 (-)
XLOC_008146 CR376827.1 non-coding upstream 2043023 48576584 ~ 48576700 (-)
XLOC_008148 NA non-coding upstream 2132310 48665871 ~ 48708073 (-)
XLOC_008151 NA non-coding upstream 2304187 48837748 ~ 48843424 (-)

Expression


Co-expression Network