CI01000020_00108833_00112799


Basic Information

Item Value
gene id CI01000020_00108833_00112799
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 108833 ~ 113427 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00108833_00112799.mRNA
GCAACTCAATGTCATCTGATGACCTTCAGAAGAGTGGAGGCCCGAAACCATCTTGCTTTATACACAAAACCACACGGATTGTTGGGGGGATGCAGGTGCAGCGAGCAGAGGACGGAAGCTGGGTGGTCAGCATTCAAAAAAGGAACAGACACTGGTGCGGAGGTTCACTCATCAGAGAGGAATGGGTTCTGACTGATCAACAGTGCTTCTCCACCTGTGTTCCTGACCTTTCGGAGTACACTGTGCAGGTGGGGCTTCTTCATCTCAACGCATCCGCCGACACACAGGGTCTCCGGATTGCACATGTGGTCTGTGGGCCCGAGGGATCCAACCTGGCCCTGCTCAAACTCACAACTCTTATGCCCAGGCCTGCCCCTCTCTCTGAGCATGTGCGAACTGTTCAGCTTCCTGTCGCAGGGTGTGCTGTTGCAGAAGGCATTTATTGTCTCATGTATGGCTGGGGAGATACTAAAGGTACGGGACATGAGGGCAGTCTGAAAATGGTGGGGCTTCCAATTGTCAGCAACAAAAGGTGTTCCCAAAGCCACAACGGTATTCTGCCCATCACAGAGACCAAAATCTGTGCTGGAGGCAAGAGAGACCAGGGTGTTTGTGAGAAAGACTACGGTGGCCCATTGGTGTGCCAGGAAGGAGAAAGCAAAGTAATAGTGGGCGTGAGCATCAACGGCCGTGGGTGTGCTGTCGCCAGGCGTCCTGCTGTCTTCGTCAACGTGGCCTTCTACTCTGAATGGATCCGCAAAGTCTTCAAATACTATTCAGACATGGAAATAAGTTACTAGACTGTTATATTTTCCATTGTGGTGAAAATATACTCATGGCACGTTATGGTTTTTAGCATCTACAACGTGAAGACCATGGTTGCTGTACAGTTGGTGTACAAAGAACTTGGAGGCCAGAGTTTGGTTTTAGATTGAGTTTTTTTGTTTTAGATTAAATTAAAACCACTGGTACAGAAAAGGTGCAAGACAAAAATATCTAATGTTCTCACAAAGAAACTGCAACAATCAGATGTCAGACATGAACCAACAAATGAAGGAAATGACAACTTTTGAACTTTTTTTTTTTTTTTTTTTAGAAGATTGTTGTGGCTAGTGAGTTAAATCTCAAAAATCAAGGACAGATGGATAAATGAGGAAAGAAAAGCAATTAGAAGAAACTGTGGTGTTCATCCATATGAACATATTTGTCTCAAACCAGAGCAGATGTTGTTCTAAATGTCATTCCCTGGAAATACTTGAAGATGGCAATAACTCGACGTTTTCAGACAGGACAGAGCTTTTGTTTTCACTGGGGTGCATTTTTCCAGGTGTTATCCCTTGCTCACAGCTGATTTCTCTTCAATGTACATCATTTTAAAGGCATTTCAGGTGCAACTTAGGAGGACAAAATTCTGTATCACTGTTTCCA

Function

NR:

description
Hgfa protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00108833_00112799.mRNA True 1428 mRNA 0.45 7 108833 113427

Neighbor

gene id symbol gene type direction distance location
CI01000020_00126243_00220377 SND1 coding downstream 12816 126243 ~ 221460 (+)
CI01000020_00250359_00289375 SND1 coding downstream 136932 250359 ~ 289375 (+)
CI01000020_00466505_00489442 NA coding downstream 352849 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 387763 501190 ~ 503119 (+)
CI01000020_00536611_00538626 NA coding downstream 421507 534934 ~ 538982 (+)
G110552 NA non-coding upstream 7769 98210 ~ 101064 (+)
G110554 NA non-coding upstream 10787 96363 ~ 98046 (+)
G110539 NA non-coding upstream 13575 94749 ~ 95258 (+)
G110538 NA non-coding upstream 15384 57204 ~ 93449 (+)
G110581 NA non-coding downstream 5734 119161 ~ 137052 (+)
G110609 NA non-coding downstream 200844 314271 ~ 314519 (+)
G110615 NA non-coding downstream 209639 323066 ~ 323265 (+)
G110616 NA non-coding downstream 211037 324464 ~ 324703 (+)
G110617 NA non-coding downstream 211508 324935 ~ 325154 (+)
G110562 NA other upstream 60793 30693 ~ 48040 (+)
G110589 NA other downstream 67351 180778 ~ 226848 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 697472 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 954629 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1262942 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2330817 2443278 ~ 2444944 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location