CI01000020_00126243_00220377 (SND1)


Basic Information

Item Value
gene id CI01000020_00126243_00220377
gene name SND1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 126243 ~ 221460 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00126243_00220377.mRNA
ATGGCATCTGCAGTAACGGCACAAGTTCAGTCCAACCCAACTTCAGCTCCGCAGCTGCAGAGGGGAATAGTGAAGATGGTCTTGTCTGGTTGTGCTGTCATTGTTAGGGGTCAGCCACGAGGAGGTCCCCCTCCAGAACGGCAGATCAACCTGAGTAACATCCGAGCCGGGGCTCTGGCCCGTCGCGCAGTTCAGGGCCAACCAGACACCAAGGACACACCAGATGAGCCATGGGCTTTCCAGGCACGAGAGTTTATGCGCAAAAAGGTAATCGGCAAAGAAGTCTGCTTTACCGTGGAGAATAAAACCCCTCAAGGCAGAGAATATGGCATGGTGTACTTGGGAAAAGACACATCAGGAGAAAATATCGCAGAGTCCCTGGTGGCGGAGGGTCTTGCCACAGTTCGCAGAGAAGGCATCAGAGGAAACAATCCTGATCAGGCAAGACTGTGTGATTTGGAAGACCAAGCCAAGTCTGCTAAAAAGGGCCTGTGGTCTGAGGGTGGAGGCTCACACACCATTCGAGATTTGAAGTATACCATCGAAAACCCTCGCAACTTTGTGGACTCCCTTCACCAAAAACCAGTCAATGCCATTATTGAACATGTGCGTGACGGCTGCATGGTTCGAGCGCTACTTCTGCCCGACTGCTATCTGGTGACAGTCATGCTGTCTGGAGTCAAGTGCCCTACGTTTAAACGGGAAGCAGATGGCAGCGAGACACCCGAGCCCTTCGCAGCAGAGGCAAAGTTCTTCACGGAGTCACGACTTCTTCAAAGAGATGTGCAGATCATTTTGGAGTCTTGCCCCAACCAAGTCATTCTGGGTACCATCCTGCACCCGAATGGGAACATCACAGAGTTGCTGTTGAAGGAAGGCTTTGCACGTTGCGTGGACTGGTCCATGGCTGTGTACACCCAGGGTGCTGAGAAACTCAGAGCAGCAGAACGATCAGCGAAAGAGCGTAAAGTGAGAATCTGGAAGGACTATGTTGCTCCCACAGCCAATCTGGACCAGAAGGACAGACAGTTTGTGGCAAAGGTCATGCAAGTCGTGAACGCAGATGCCATCGTGGTGAAGCTGAACTCTGGGGAGTATAAGACCATCCACCTGTCCAGTATCAGGCCCCCAAGGCTAGAAGGCGAGGAGAAGAACAAGGACAAAGACAAGCGTTTCCGTCCACTCTACGACATTCCTTACATGTTTGAGGCTCGGGAATTCTTGAGAAAGAAGCTCATTGGCAAGAAGGTTAATGTCACGGTCGATTACATCAGAGCTGCCACCAGTGCCATGGAAACGGGTGGCGTCCCGGCTTTCCCAGAGCGCACCTGTGCTACAGTCACCATTGGAGGAATGGTAAGTGAGGCCAGGCACATGAGTCTGGGGTGGTACTGCGCCTCAGGCTGTGATTACCCAACCGTGCCCCAGTGCTTGGCGTTAGAGCATTGTGGAAACATTGCTGAGGCTCTGGTCAGTAAAGGTCTCGCCACAGTGATCAGATACCGCCAGGATGATGATCAAAGATCTTCCCATTATGACGAGCTCCTGGCGGCAGAGGCAAGGGCGATCAAGAACGGTAAAGGACTTCACAGCAAGAAAGAAGTGCCCATTCACAGGGTGGCAGACATTTCAGGGGAGACACAGAAAGCGAAACAGTTCTTGCCATTCCTGCAGAGAGCGGGCCGCTCGGAAGCCGTGGTGGAGTACGTGTTCAGTGGCTCTAGACTCAAGCTCTACATGCCCAAAGAGACATGTCTCATCACCTTCCTGCTCGCTGGTATTGAGTGCCCCCGAGGGTCTCGAAACATGCCAGGTGGGATGCAGGTGGCAGAACCCTACAGTGAGGAAGCCATGCTGTTCACCAAAGAGCTGGTTCTTCAGAGAGAGGACACCCCGACAGCCCAGAGGAGAGGGCCTAATCTTCCCCACAACGTCAGCTTTCCCCCACCCCACACGGCTCGAGAGAAAGGGCAATTAGGACAGAATCCATCTATAGAGCTTCAAATAGGCTTGAATTTTCCCCTAATAGTGCAGAAAAGCTTGATTTATTCAGGGCAGAACGAGAGCTGTGAAGTCACATTAACAAGATGGCTGACCCAACATTACACATTACTTTGTGATACTTGCAGCCATAAACTTCGAGCAGCACTATTGACTGATGGTGCAAAAGGCAAAGCTATAAAGGGGACATTTGCCTCTGTGGCTGTATCTTTTCTGCACTTCCAACGGGCTGCTAATGGCTGTGTTTGTCATGATTTAGACACGTTAGCATGGCCTGTGCCAGCACAATTGGGAGGGCAATGCCTGCTGATTAGAGCATGTGCCTTTCAGAGCGTTCTGAAATATGACCCGCTTCAGAGACGTGGCTCGTGTCAATGCGCGTATAATGATTTTATGGCGATCTTAATGCGATTGCTAGGTCGCTTCAGTATGCCAGCTCAGAGGTTAACAAATGGGCCCTCCGTGGCCGTCATAAAGCCCCTACTTTTATTTTCGTCCAGAACTAAGGCCCAGACAGAAGTGCAGCCAGTTAACATCTGTTCAGGAGCTCTCCTGGGACTGCCAACGAGAAGGTCAGACAATGACAAACGCACTGTTAGGTTTTGTAAAAGGACTATTTTGGCAAATAATTGGGCTGAAGAGCATGAAGGGTCCTCAAACCCTTCGGCAGAATGTGCCCTCTTCCTTTATTCTCTTTCTCTGCTCTTATATGCTGCCTGCTCAAGGATCCACTTCAATCCTGTACAATACTCTATTAAAACCAGACTGGCAATTATAGCTCTGACGTTCGGCTGCATAAGCAGCAGCTCACTGGCTATAATTGCAGTTTTTAAAGTTATTGTGGCAACAGCGGCTTTGTTTGTAAAGACATCAGAACAAGGGTTATAAGCTGTGAAATATATTCTGATATTATGATGTTCTACCTAAATATATTTATATAAAAACACTAAGGCAGGCAGTGACTAATCTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTTGCAGAAATGAAACAAGTTTGAGTGGTCTGATATGGCTTGATTAATAGCATGAGTTGGGGTGAGGTTACCTGTTTGGTCTAAGGATGGGAAACAAGACTGTTTGGGAGACTTGTTTGGAAAGAAAAAATATTGATTCCACTTCATGCCCTTAGTGGGGACGCAGTTGTTATTTTAATATTTGGCATCAGTTCAAGTTCGAATGAATACTAGATTTGTGTTGAAATAGCTATACAGTTATTTTACCTATCTGTACAATTACTCACAATTCCCCCAAACTACTGCTAAATCGAGGCCTGTGGTGTGAATGTATCCTATACCCCTTTGACAGATTGTTAAAATTACTCATGCAGACACTGAATACAAGAATACTGTTCCCATTGACTTTCTTTTTTTAAAGCGCAGATACAAACAGTGTGAGACTGGTATTAACTGGGGCGCTGCAGAGCCTAAAGACTTTTTTGTTTTGTGTGTGCATGCTTACATGTTTGTCTAGGTGTACAGTGGGTACGGAGTCTCACTGTGGCCAGATGTCCCAACTTTATGTGAAGGGTGTGTGTCTGTGTGAGCTGGATCAATTATCATGTAATCAGCTTTAATCTTCCAGACAGCCTGCATGCACTCAGCCAATATGCCCTGTGATGCAAACATATATTACATTTTATTACCCTCTAATATGCCATCAATTTGTGGCCTAATTTTTTTCTATCATTATTTCTTATTCTTGAATTTCAATTAGCCAAGATAGAAAGCACTTGCTGACATTCAAACAAGCCTTGCCATACAAGTTAGAGGTACGCAGTATTGCACACGTCGCAGTCAAAGCTTATGAGCCTGTGCAATATGTCATGACGCACCTCTTATGAGAATACAAAAGCTGCTTGATTTATGACGCCTCACTGCCCATCCGTGTGATGTCAATGTCTAATGCATTGGCTCATAAACGTGTATAGGAAATGGCTAGTGATACA

Function

symbol description
snd1 Predicted to enable RNA binding activity and nuclease activity. Predicted to be involved in RNA catabolic process. Predicted to act upstream of or within gene silencing by RNA. Located in cytoplasm. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1).

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process

KEGG:

id description
K15979 SND1; staphylococcal nuclease domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00126243_00220377.mRNA True 3972 mRNA 0.47 25 126243 221460

Neighbor

gene id symbol gene type direction distance location
CI01000020_00108833_00112799 NA coding upstream 12816 108833 ~ 113427 (+)
CI01000020_00250359_00289375 SND1 coding downstream 28899 250359 ~ 289375 (+)
CI01000020_00466505_00489442 NA coding downstream 244816 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 279730 501190 ~ 503119 (+)
CI01000020_00536611_00538626 NA coding downstream 313474 534934 ~ 538982 (+)
CI01000020_00603718_00606833 NA coding downstream 382126 603586 ~ 607523 (+)
G110552 NA non-coding upstream 25179 98210 ~ 101064 (+)
G110554 NA non-coding upstream 28197 96363 ~ 98046 (+)
G110539 NA non-coding upstream 30985 94749 ~ 95258 (+)
G110538 NA non-coding upstream 32794 57204 ~ 93449 (+)
G110609 NA non-coding downstream 92811 314271 ~ 314519 (+)
G110615 NA non-coding downstream 101606 323066 ~ 323265 (+)
G110616 NA non-coding downstream 103004 324464 ~ 324703 (+)
G110617 NA non-coding downstream 103475 324935 ~ 325154 (+)
G110619 NA non-coding downstream 106937 328397 ~ 328731 (+)
G110562 NA other upstream 78203 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 589439 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 846596 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1154909 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2222784 2443278 ~ 2444944 (+)
G111183 NA other downstream 2426051 2647511 ~ 2658913 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028732 snd1 coding NC_007115.7 CM002888.2 19396945 ~ 19694108 (-)