CI01000020_00250359_00289375 (SND1)


Basic Information

Item Value
gene id CI01000020_00250359_00289375
gene name SND1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 250359 ~ 289375 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00250359_00289375.mRNA
CAGGTGGAAGTGGAGGTGGAGAGCATGGATAAAGCAGGGAACTTCATTGGCTGGCTTCATATCGAGGGTGTGAATCTCTCCGTGGCTCTGGTGGAGAATGCACTGTCTAAGGTCCACTTTACTGCAGAGAGAAGCTCCTACTACAAGAGTCTGGTATCTGTGGAGGAAACCGCCAGACAGAGGAAAGAGAAGCTCTGGGCCAATTATGAAGAGAAACCAAAAGAAGAGGTGGCTCAGCTCACAGAGGAGAAAGAACGTGTGGCGAAGTACAGATCCGTGTATGTCACCGAGATCACAGATGGAATGCACTTCTACGCACAGGACGTGGAAACCGGTACTAAGCTGGAGAACCTGATGGAGAGCATGCGAGGAGAGATTGCCGCCCAGCCTCCAGTGGAAGGATCCTTTGCCCCGCGCAGAGGGGATTTCTGCATCGCAAAGTTTGCTGACGGAGAATGGTACAGAGCACGCATTGAGAGAATTGAATCTCCAGCAAAGGTTCACGTGTTCTACATCGACTATGGAAACAGAGAGATATTATCCTCCACACGTCTTGCAGCCCTTCCTCCAGCCTTCAGCACGCGTACACTTCCTCCACAGGCTACAGAGTACGCATTTGCCTTCATTCAGGTCCCACAGGATGAAGATGCACGGGCCGACGCTGTGGACAGTCTGGTCAGGGACATTCAGAACACACAGTGTCTGCTAAATGTGGAGTACAGCGGAGTCGGAGTCGTCTGCCCGCACGTCACGCTGCAGTTTGCTGACTCTAAAGATGACGTGGGTCTGGGTCTAGTGAAAGAAGGCCTAGTCATGGTGGATGTACGGAAAGAGAAGTACCTCCAGAAAATGGTAAGT

Function

symbol description
snd1 Predicted to enable RNA binding activity and nuclease activity. Predicted to be involved in RNA catabolic process. Predicted to act upstream of or within gene silencing by RNA. Located in cytoplasm. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K15979 SND1; staphylococcal nuclease domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00250359_00289375.mRNA True 858 mRNA 0.52 6 250359 289375

Neighbor

gene id symbol gene type direction distance location
CI01000020_00126243_00220377 SND1 coding upstream 28899 126243 ~ 221460 (+)
CI01000020_00108833_00112799 NA coding upstream 136932 108833 ~ 113427 (+)
CI01000020_00466505_00489442 NA coding downstream 176901 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 211815 501190 ~ 503119 (+)
CI01000020_00536611_00538626 NA coding downstream 245559 534934 ~ 538982 (+)
CI01000020_00603718_00606833 NA coding downstream 314211 603586 ~ 607523 (+)
CI01000020_00621182_00624570 RAP1B, RAP1A coding downstream 331807 621182 ~ 625201 (+)
G110581 NA non-coding upstream 113307 119161 ~ 137052 (+)
G110552 NA non-coding upstream 149295 98210 ~ 101064 (+)
G110554 NA non-coding upstream 152313 96363 ~ 98046 (+)
G110539 NA non-coding upstream 155101 94749 ~ 95258 (+)
G110538 NA non-coding upstream 156910 57204 ~ 93449 (+)
G110609 NA non-coding downstream 24896 314271 ~ 314519 (+)
G110615 NA non-coding downstream 33691 323066 ~ 323265 (+)
G110616 NA non-coding downstream 35089 324464 ~ 324703 (+)
G110617 NA non-coding downstream 35560 324935 ~ 325154 (+)
G110619 NA non-coding downstream 39022 328397 ~ 328731 (+)
G110589 NA other upstream 23511 180778 ~ 226848 (+)
G110562 NA other upstream 202319 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 521524 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 778681 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1086994 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2154869 2443278 ~ 2444944 (+)
G111183 NA other downstream 2358136 2647511 ~ 2658913 (+)

Expression


Co-expression Network