CI01000020_00466505_00489442


Basic Information

Item Value
gene id CI01000020_00466505_00489442
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 466276 ~ 489664 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00466505_00489442.mRNA
TCATAAAACCACCCTTCTGTGACACTATCTGCAAATCTTTTCATCTGGAGGTCATGGCGGTGAAACCCTGATGCGAGTCATACCATACAGTACCATCATGCAGTCGTAACAGCTCAAAATGGCACATGGGTTCCTGATCCTCATGACTCAGTAATGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTTTAAAGTTACTGTACTTGCTCATTATGAGCAGACTGACATGGCACATTGCCTTCCATTATCTGGATTACATAAGCAGCGCGTGCCTCCCGTCGGGATCACAGCGGCAAACTCTCGGAGAGAGGTGCGGTGGCGTGCTGTGGGATAGATATAAACTCACACGTTTGTACGAGAATGCCGCTTCCACATCACCCATCTCTCTCTGTAATCAGGAGCCCGCGGTCACGCGTTTGATGAGCTGCTCACTCGTCCCGCTTGTGCCGACAGAGTTTATGGATTCCCTTTCCCTGTTGACCACATGCAGGTCTCATAAACCCAATTCGAGCACTCAATGCAGAGGCGCCTACGAGTATGCCTGGGAAAATACAACGCAAACACACCGTCCGATTCGTAAATGCTTTTATATGCTTTATAAACAGCTAAAGATTACAAGCACCTGTTTGTATCATCGGTGTGACGAAACCCCCTTCTTTCCCCATCTCTTCCACAAACTGTGGGTGTGTGCAGCACAGGGCGTTCACCGCGGCGGGTCTTTTTGCGGTCTGGGCTTGCTGTTCCTTGAACGAGTAGCCAGGAAGCCCTTACCCCAAAAAGTATCTGCAGAGGACCACATCATCTTAACAAATATATCAAGCTCTCAAAATTTCCATCAAAACCCAGATTACTGAAAAAACTGCTTTTTTTTGCATAGCATAGTTTTGTTGTTCTTGTTGTTTTGAAAAAAGAAACAGTTGGTGATCCACGTTTAATAACAAATTAACCTTAAGGATTTCTAAAACAGCCATAAACATCATGGTACAGTATTTTGCATAGATCCAGCAACACATTTTGTTCTGGAAGATTTACAGACCATGTACGTTTTAATATAATAATTTGTCTTTCTATCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00466505_00489442.mRNA True 1093 mRNA 0.45 6 466276 489664

Neighbor

gene id symbol gene type direction distance location
CI01000020_00250359_00289375 SND1 coding upstream 176901 250359 ~ 289375 (+)
CI01000020_00126243_00220377 SND1 coding upstream 244816 126243 ~ 221460 (+)
CI01000020_00108833_00112799 NA coding upstream 352849 108833 ~ 113427 (+)
CI01000020_00501322_00502978 LEPB coding downstream 11526 501190 ~ 503119 (+)
CI01000020_00536611_00538626 NA coding downstream 45270 534934 ~ 538982 (+)
CI01000020_00603718_00606833 NA coding downstream 113922 603586 ~ 607523 (+)
CI01000020_00621182_00624570 RAP1B, RAP1A coding downstream 131518 621182 ~ 625201 (+)
CI01000020_00631105_00635541 MCAT coding downstream 141441 631105 ~ 635541 (+)
G110663 NA non-coding upstream 57112 387647 ~ 409164 (+)
G110645 NA non-coding upstream 108445 357625 ~ 357831 (+)
G110641 NA non-coding upstream 112759 352907 ~ 353517 (+)
G110640 NA non-coding upstream 114151 351896 ~ 352125 (+)
G110634 NA non-coding upstream 119845 346140 ~ 346431 (+)
G110732 NA non-coding downstream 52936 542600 ~ 543136 (+)
G110780 NA non-coding downstream 63525 553189 ~ 553440 (+)
G110783 NA non-coding downstream 66375 556039 ~ 556269 (+)
G110714 NA non-coding downstream 69257 558921 ~ 560207 (+)
CI01000020_00752731_00769950 NA non-coding downstream 264789 752694 ~ 770027 (+)
G110589 NA other upstream 239428 180778 ~ 226848 (+)
G110562 NA other upstream 418236 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 321235 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 578392 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 886705 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 1954580 2443278 ~ 2444944 (+)
G111183 NA other downstream 2157847 2647511 ~ 2658913 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028730 dre-mir-129-1 non-coding NC_007115.7 CM002888.2 19047466 ~ 19047555 (-)
rainbow trout (Oncorhynchus mykiss) G1713044 NA non-coding NC_048585.1 CM023239.2 18080075 ~ 18083417 (+)
eurasian perch (Perca fluviatilis) G157330 NA non-coding NC_053126.1 CM020923.1 22377944 ~ 22381452 (-)
tiger barb (Puntius tetrazona) G27562 NA non-coding NC_056702.1 CM032071.1 9686499 ~ 9872003 (+)
mexican tetra (Astyanax mexicanus) G157246 NA non-coding NC_035914.1 CM008317.1 8947884 ~ 8948321 (-)