CI01000020_00536611_00538626


Basic Information

Item Value
gene id CI01000020_00536611_00538626
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 534934 ~ 538982 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00536611_00538626.mRNA
GTATATAAAAGTCTACAGAATCAACCCAATATGAGGCAGGGTCTCACCAGCACTCAACAACATCTAGACATGATGTATTGGTTGGTTGGAAACAATGAGAAAAATATGCCTGCCTTTTGACTTATGACTTTCATCTATTCATATGCGCAAAAACAGGGATGGGACTGGGCAATAATGGCACCCCTTTTGAAATGGTTAAAAAAATGTATTGGATTTTTATTGGTTTGTTTAGAAAGATGTGTACATTGACACAGAGGTTGGCATCAGCTATTCAGTAAGTTATTTTTCACATTTATACAGGTACCCGTTTTGTATAATGGCCCATAAAGCTTCATGCTTTCTGTCTCAGGGCTTAAGTGAACTCACAGGCTCAATTAGAAAGCCTGATCATGGCAGCTAAGATGAGTTATGAATCATCTGCTCTGAAAAGGGTGTAATTAGCTGTGTCAGTCTATCAAGAGCAGACGTACATCTACGCTCTGTTTATGCACAGGACTGATATGGCTGTGGAAGCTAATATCATCCATCTCATATGGATTTGCACATCAGCTGCAAATGCACAGCAGGGCAGTCCTTCTAGTGCAGGGGGATTTAAATGTTTTGAATGTCTTATCACATTTTACGGTGGTACATTAGATGCCACAAACAGACCTGAGTGGGTTTCTATGAAGTGTGCATGCTGTACGGTGATGTTGGTTTATCTGAGGACTTGCTTTTGGATTACTTATACATCACTTACAAAGAAAATGTTTGGTTTGTGTTAGGAAGCATTCCCAGATTTGGAAATGGCTGTCACATGGAACTTCACATGCTGTTCCAACTCTGTTAGGTTAAGAAACTCTAATGTATGTAACACTCCTCAGCACCAGAGCCAAGCCACATAATCCAAAATCTAAAACAGCAGCCTCCTCCCACAGCAATCTGCGAGTCAAACAATTACTTTTATATACAAACAACAGATGTTGTGTCTCCACCTTTCATGGGAACCCACCAATCCCTGCTACTTAGAAAAATATGTTCTCCAACTGTCATTTATAATAGTGTTACCTTTAATAGGTTTAAAACATTAGCTGTGGGGTTTCCAAGATTTGGGAATCTCCACGGCAAAAACATGGTTTTCCACTGTGAAACATGCTCAGCTGGGCAGACACCTCAGAAATGACCTCTAGTGGTGATGTCTATCACAGAAAAACAAATCATAGGTTGTCAGAGATGTTGGTGAGAGTAATGACTGCCTTGGTTGCCTGTGCTGGAATACTCATTTTGTATACACTGGATCCAATGTATGAAGGAATTTTCTGTATTTATTTTTCCACAGGTGTTTTATCCATATTTTGAATTAAGCATTGCATTGTGTTGTGCTTCAGGGTTAAAAGAAATGTTCATAAACAAGAAATTACCAGTAGCTTTTTAGTTTTTCTACAGATTTTTTTCTTACAGTGTATTTATGTGATTTAGCTTTACATTCAGCTTTTACATTTAAATGGGTCATATCATGAGGAATCAAGCTTTCCTCAATCTCTTGAGATAAGAGTTGTACTCTTGACACAAAACAAAAAACAACTAAAGGAATAAGGACATGTGTGATATTTACCAAAAAAATATGCCTTTACACATCCTCACATCTTCTGTTACTAATAATGCAATTTGCTCTTCATTTCAGAAATATCCACCACTATGTCTGAAGACTGGCTCACAGACCTTACTCAAGAATCTGCGCTCCCCGACTGCAATGCGGAACGTTCTGGAATCTGCAGTTCAAGTGACACTTTGCCCACCACTGTCCTGAGCAATATCAGCAAAAATGACAGCACAACCACTGTCTCCACCAACCTCTCTCAGAATCCAATCCTGTTTCCAGCCCCACCTATGTTTGTGGCACTGTATTCTGATTGGAACAGTGCCCTGGCAACATGGGGTTCAGCATGGGAAGCACACATTTACGGCCTGGGCACTGTGTTTTGTCTAGTCGCTTTGGCCTCCACCCTGAACCTTCTGTGCCTGCCCCTACAGTACCCATCAGGCTGTGGCTACTTTGCTCTGGTCAGTCTCTGCCTGGTAGCCGCTGGCTGCACTAGGGCCTTTGCCTTAGTGTACGATGCGTACGGATACCAGGACCGCATGGCATCCCCAGAGGCCTCGCTGTTACTTTATGAGGCACCATTCCCCTGCATGACTGCTGCCTTTGGCCTAGTATTCCTGCTCCTGTCAATGCGCTCTCGTATGCAGCTATCCTATTCCGCCTTTCAAAGACCTTGTTTTCTGGCCTGCTTGGTGCTTCTGCACTTTGCTGCTGCCTTTGGTCCTGTTGCATTACTCCATGTAGACCAGCAGGTCTACCTGTTTCTGTCCTTGATCTCTAGAGGTGCCTTTGTGGCTCTGGCAGCTTTCCTATCAGCTGCATATTTTGTGTTCTACTGCTACGTTCGTGCTGACTCCAAGCATATTTATCATCTGAACAACACATCACCGACACCAGCTGAACGCTACAACCGCTGCCCATTTGCAGAGAGCCGAGATTGGGACCGGGCAGCAGCTGCAGTGCTACTATCTGCTGTCTTCTCTCTGACTTGTGCGGGGCTGCAACTCTATGCCATGCTGCATGCACTCGGCATCGCTGGAAGTGCAGAGTCCTTTCGGCCTTGGCCGTGGTGGACTTTCCAATTTAGCTGCCGAGTGTGTGAAGCAGTGGTTTGCCTCACACTGGTTCTGGTAGTTGCTCAACCAGTCTACTGTTCTGATCATCTTCCCCAACCAGGCAGTTGCTGGACAGAACTTCTTGCGGCAAAGTCACCTATCATTCCTGGGAGCTACCAGTGGACTCTATCCCAGCAGGAGAAGCTGGCCATCTGCGATCCAATTGGGCATGGAGAGACAGAGTGCCTACCCTTGTACACGTTGGTGGATGACCGTCTCGGCAGCTTGAATGGCCTTGACCTTTTATACCATAGCAACCGGGCATTGGCCTATCGTGACCTTGACCTGGATTTGCCCAACACTCAACCCACCACTAGTGCCCCTTCTGTGGGTTCATCCTGTACCAGCGACTCCACAGCAGACCTGCGCCCTCCATCACCCATAAATCTGCGTCGAAGCATTGATGAGGCACTGTTTAGTGAGTCTTTATTTCCCATGAGTCTCTTCAGCCCATTACGACCTTTCACCTCTAGTGACCGCTCCCTCAATGGTAGAGAGACCAACTCCAGTGGTGCCCAAACCCTGAGAGACACCCTTACTCCTGATCCCGGCTTATACAGAACATCTTCATGTGTGGAAGTGCTACCCCAATTTCCCATTCCTTCTCAAGCCCAACCAGATGGTCCATCATTGGGTTTTCCTCCATCTCCATCTCCCTCACTGTCATCTTCCACTTGCTGCTCATCTCCAGAGCGCTGGAGAGGCAGCTCCAGTTCCTGTTCCCTCTACAGACAGTCTCTCGGTAGCTCATCTCTCGTTTTGTGCTCTAGTCCAGAAGGACACCATCCACCACCCTCTACCCTCAGTGAGGGTTCCAACCGCACTGCCAGCTCTGGCCACCAAGGGGGAAGCTTACAGAGACCCTACAGAACTTTAAAGTCAGAGGAGAGCCTGGACCAGCAGTCAGAGTTTGACCAGTCTGTCCAAGAAGAATTTATCAGTGTGTGCAGACAGATTGATGCTCTTAGTGTCTGCAGTGAGACTATTGACCTCTAGGGGGAGACCTCTACTTTCAAACACAGCCGAATGATGTAATATGATGAAGCCAAAAGAGTTTCAGTGATGGACAAGTAATGTGCTGCTCAGGTGATTTGGTGAGTCTGTTTGCCAAGGTGTCAAAACACATTTGCTCTATGTAGACATACAGGAAAATGTTTTGTGGACCAGAACTGTGCCAAATGTTTCATTTTATAAGGGTGTTTGTTGGTTTGTCAGGTAAGTTCTCCAAAGAGATGGATTCTGAAGTCAATATCCTTGTAAAGGTTTAAGAAGTGCCACCGATTGCCAGAAGCTTAGGCAGATTTTGTACAAAAGTTTTTTGATTATTGATAAATTTGTAATTGTAAAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00536611_00538626.mRNA True 4049 mRNA 0.45 1 534934 538982

Neighbor

gene id symbol gene type direction distance location
CI01000020_00501322_00502978 LEPB coding upstream 31815 501190 ~ 503119 (+)
CI01000020_00466505_00489442 NA coding upstream 45270 466276 ~ 489664 (+)
CI01000020_00250359_00289375 SND1 coding upstream 245559 250359 ~ 289375 (+)
CI01000020_00126243_00220377 SND1 coding upstream 313474 126243 ~ 221460 (+)
CI01000020_00108833_00112799 NA coding upstream 421507 108833 ~ 113427 (+)
CI01000020_00603718_00606833 NA coding downstream 64604 603586 ~ 607523 (+)
CI01000020_00621182_00624570 RAP1B, RAP1A coding downstream 82200 621182 ~ 625201 (+)
CI01000020_00631105_00635541 MCAT coding downstream 92123 631105 ~ 635541 (+)
CI01000020_00643857_00646974 CBLL1 coding downstream 104875 643857 ~ 647559 (+)
CI01000020_00701439_00712656 DEF6C coding downstream 162457 701439 ~ 712825 (+)
G110663 NA non-coding upstream 125770 387647 ~ 409164 (+)
G110645 NA non-coding upstream 177103 357625 ~ 357831 (+)
G110641 NA non-coding upstream 181417 352907 ~ 353517 (+)
G110640 NA non-coding upstream 182809 351896 ~ 352125 (+)
G110634 NA non-coding upstream 188503 346140 ~ 346431 (+)
G110732 NA non-coding downstream 3618 542600 ~ 543136 (+)
G110780 NA non-coding downstream 14207 553189 ~ 553440 (+)
G110783 NA non-coding downstream 17057 556039 ~ 556269 (+)
G110714 NA non-coding downstream 19939 558921 ~ 560207 (+)
CI01000020_00752731_00769950 NA non-coding downstream 215471 752694 ~ 770027 (+)
G110589 NA other upstream 308086 180778 ~ 226848 (+)
G110562 NA other upstream 486894 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 271917 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 529074 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 837387 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 1905262 2443278 ~ 2444944 (+)
G111183 NA other downstream 2108529 2647511 ~ 2658913 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location