CI01000020_00621182_00624570 (RAP1B, RAP1A)


Basic Information

Item Value
gene id CI01000020_00621182_00624570
gene name RAP1B, RAP1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 621182 ~ 625201 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00621182_00624570.mRNA
GAACAATTCACAGCCATGAGGGACCTGTACATGAAGAACGGCCAGGGCTTTGCACTAGTATACTCCATAACAGCACAGTCCACCTTCAACGACCTGCAGGACTTGAGAGAACAGATTCTGCGGGTCAAAGACACGGATGATGTGCCGATGATCCTGGTGGGTAATAAGTGTGATCTGGAAGACGAGAGGGTGGTCGGGAAAGAACAGGGCCAGAATCTCGCCCGCCAGTGGAACAGCTGTGCTTTCCTGGAGTCCTCTGCAAAGTCCAAGATTAACGTCAACGAGCTGAGTTATATGAAATCCATGTGCTGGTCTGGAGTCCGTTGTGTAGTTTATGAGGGGTCACTGCAGGACAGAAGACTCTCCCGTAAGCGAAATCCAGATACGGAGCTTATTGAGCTCTCGCAATAAGATAATGAGGAACTTTAGTTGCAAGTGACCAAAGTGATTCATTACTTTCTCTGTTAACGCAGCCAGAGTGCTTTACTTTTCACAAGCTTTCATGTTTCTTTGCAGTCTCAAGTTCCAACAGGCACTTTTTTTTTTTCATTTTTTGAAGCCCAAAGTTACTAAAATGTAAATGTAATTAATGACAGTAGGAACAGTATAGTTATCTGTAAATATTTTAGTGTAAAATATATACAGTACTGTGCAAATTTAATTACATTTTTTAAATTAAAGAATGTAATTTTAAATTAACATAAAATAATTTAATAAAAATGTTTTAATGTATACATTTTTTTTATTCAAAAGTTTGTTCATTTGATTGTACAAGTGGCATAGAGTGCTGATATTCATTTGATTCTGCTTTGGCTTTGTTTAAAACTATTTTCATTGGTGGAGCAAAATATACTTTAACACAAAGTCAAAGTTGTGTAAGTTACTTTGGGTAAAAGCTGATCTTCATTGACAAAGCAATATAAAAAACTAATTAGACAGGACATGACAGGATTAGACAGGAAATTTGTTGTTGGCAGAGCTTTCTCTCTCAATTGGAATTGCCGCTATGGTCAAATCTGTTTGTTTATCCACTTTCCATTCA

Function

symbol description
rap1b Enables MAP kinase kinase activity. Acts upstream of with a positive effect on hematopoietic stem cell differentiation. Acts upstream of or within chordate embryonic development; convergent extension; and heart development. Located in cell-cell junction. Is expressed in several structures, including brain; cardiovascular system; floor plate; hindbrain neural plate; and mesoderm. Orthologous to human RAP1B (RAP1B, member of RAS oncogene family).
rap1a Predicted to enable GTPase activity; guanyl ribonucleotide binding activity; and guanyl-nucleotide exchange factor activity. Involved in several processes, including Rap protein signal transduction; cellular response to cAMP; and regulation of neurotransmitter receptor localization to postsynaptic specialization membrane. Located in perinuclear region of cytoplasm. Is active in glutamatergic synapse.

GO: NA

KEGG:

id description
K04353 RAP1A; Ras-related protein Rap-1A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00621182_00624570.mRNA True 1042 mRNA 0.38 4 621182 625201

Neighbor

gene id symbol gene type direction distance location
CI01000020_00603718_00606833 NA coding upstream 13659 603586 ~ 607523 (+)
CI01000020_00536611_00538626 NA coding upstream 82200 534934 ~ 538982 (+)
CI01000020_00501322_00502978 LEPB coding upstream 118063 501190 ~ 503119 (+)
CI01000020_00466505_00489442 NA coding upstream 131518 466276 ~ 489664 (+)
CI01000020_00250359_00289375 SND1 coding upstream 331807 250359 ~ 289375 (+)
CI01000020_00631105_00635541 MCAT coding downstream 5904 631105 ~ 635541 (+)
CI01000020_00643857_00646974 CBLL1 coding downstream 18656 643857 ~ 647559 (+)
CI01000020_00701439_00712656 DEF6C coding downstream 76238 701439 ~ 712825 (+)
CI01000020_00715984_00729331 ATXN10 coding downstream 90783 715984 ~ 729961 (+)
CI01000020_00752731_00769950 NA coding downstream 127493 752694 ~ 770027 (+)
G110714 NA non-coding upstream 60975 558921 ~ 560207 (+)
G110783 NA non-coding upstream 64913 556039 ~ 556269 (+)
G110780 NA non-coding upstream 67742 553189 ~ 553440 (+)
G110732 NA non-coding upstream 78046 542600 ~ 543136 (+)
G110727 NA non-coding upstream 80104 453183 ~ 541078 (+)
G110741 NA non-coding downstream 262927 888128 ~ 888384 (+)
G110808 NA non-coding downstream 267741 892942 ~ 893173 (+)
G110822 NA non-coding downstream 344192 969393 ~ 970349 (+)
G110742 NA non-coding downstream 349670 974871 ~ 975583 (+)
G110589 NA other upstream 394334 180778 ~ 226848 (+)
G110562 NA other upstream 573142 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 185698 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 442855 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 751168 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 1819043 2443278 ~ 2444944 (+)
G111183 NA other downstream 2022310 2647511 ~ 2658913 (+)

Expression


Co-expression Network