XLOC_008142 (etfdh)


Basic Information

Item Value
gene id XLOC_008142
gene name etfdh
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 48070872 ~ 48103207 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015891
CGTCCTCTGACGTCATGTTGGGCTGCGCCAACACAGACGCGCTGCTCGAGTTGTGTTATGACACTTCTTCTGTAACAGGGTAAACAGAGGTGAGAAGTGTTTGTCCGCATTCAACCTGGAAAACCAGCCGAAGAGTTGAGCCGAGCCACAGCGGCACATACAGCTCCACAAATGTTGCCAGCAAGTAGATATACCCTCCAAGCACGGAGGTGTATACATGCACTGAAGGTGGTTAAAGCAGAGCATGTTGCTCCTCAGATTTACTCCACACGCTGGTTCTCCTCTGTGCCACGGATTACCACACATTACACAGTTTACCCCAGAGACAAGGACTCGCGATGGGAAGGGGTAGAAATGGAACGCTTCGCTGATGAGGCAGACGTTGTCATTATTGGTGGTGGTCCAGCCGGCCTATCAGCTGCAATCCGGCTGAAGCAGCTGGCCAATCAGCATGAGAAGGAGCTGCGGGTTTGTGTGGTGGAAAAGGCATCTCAGATCGGAGCTCACACACTGTCTGGAGCCTGTCTGGAGCCCACCGCACTTAACGAGCTCATTCCAGACTGGAAGGAGAGAGGGGCACCATTGAACACTCCAGTTACAGAGGACAAGTTTTCCATTTTGACAGAAAAATACCGCATTCCCGTACCAATACTACCAGGACTTCCAATGAATAACCATGGAAACTACCTTGTTCGCTTGGGGCATTTTGTACGCTGGCTTGGGGAACAGGCGGAAGAGCTAGGAGTGGAGCTGTATCCAGGCTATGCCGCAGCTGAGGTGCTGTTTCATGAAGATGGAAGTGTGAAAGGAATTGCAACCAATGATGTTGGCATTGCTAAAGACGGCTCTCCAAAGGATGTGTTTGAGAGAGGGATGGAGCTCCACGCGAAGGTCACTATGTTTGGTGAAGGCTGCCATGGACATCTGGCCAAGCAACTGTACAAACAGTTTAATCTGAGGGAGAAGTGTGAGCCGCAGACTTACGCCATCGGCCTCAAAGAGCTCTGGGTTATTGATGAGAAGAAGTGGCGACCGGGACGAGCAGAGCACTCAGTCGGCTGGCCTCTGAACAGGAACACATACGGAGGCACTTTCCTGTACCACCTCAACGAAGGAGAACCACTGGTGGCCCTGGGCTTTGTCGTAGGTTTGGACTACACTAATCCCTACATGAGTCCATTCAGGGAGTTCCAGCGCTGGAAGCATCACCCTTCGGTGATGTCCACCCTGGAGGGAGGAAACAGGATTGCATATGGAGCCAGAGCCCTCAATGAAGGAGGCTTTCAGTCAATCCCTCAGCTGACGTTTCCAGGCGGCATGTTGATCGGCTGCAGTCCAGGCTTCATGAACGTGCCCAAGATCAAAGGCACACACACGGCCATGAAGAGCGGCATGCTGGCGGCCGAGACCGCCTTCAGCAAAATCACTGATGAGAATCTGCAGTCACAAACCACAGGTCTCTATATTCCTGAATATGAGGAAGCTTTGAAAAAGTCCTGGGTTTGGAAGGAGCTGCGTTCGGTGAGGAACATCAGACCATCCTTCCATACGTACTTCGGCCTCTACGGTGGGATGGTCTACACTGGGATCTTCTACTGGATTTTTAGAGGAAAAGAGCCATGGACTTTAAAGCATAGCGGCTCAGACTATGCTCAGCTGAAGCCGGCAAAGGACTGTTCTCCCATCGAGTACCCCAAACCTGACGGGAAGATCAGCTTTGATCTGTTGTCGTCTGTGGCTTTGAGCGGGACAAATCACGAACACGACCAGCCGGCTCATCTGACGCTCAAAGATGACAGTATTCCTGTTAGCAAAAACCTTGCCATTTATGACGGTCCTGAGCAGAGGTTCTGTCCCGCTGGTGTGTACGAGTATGTTCCTCTGGAGACGGGTGATGGCATGAGATTACAGATCAACGCTCAGAACTGCGTTCACTGCAAGACCTGTGATATCAAAGACCCAAGCCAGAACATCAATTGGGTGGTGCCCGAGGGCAGCGGAGGACCAGCATACAACGGCATGTGATTTCAGTATTAACACAGCGTTTTTATTACCGTCACTGGGGCACAACACACAGCTTCACAATCACTTCGCAAAACTTTCAGGGCTAAAGCTTTTAAAGACTTCAGAGAGTCGCTCTGATGTGCCTAAAGGAACAGAATGTCCTCGTATCCTCTCTGATACGAGCTTCAAGTGTAATTACGTAAAGTGGCTTTGCATTTTTCAGGTTTGAGTTCAACGATTTGAaagcattttatatatttaaatatatatacaacgTCTGTCTTAGGAATGTGTGGTAGAAGACTACAGATAATGTTGGATTGACAACCAGTGGACGTTTTAGCTCACCGTGACGCGGTTAACTGTGAACTGAcagttttgtaaataatattgtcaacgGTGGTTACTGTAACTggtagaaaataaatgaattgtctGAA
>TCONS_00015892
GGCCTCAAAGAGCTCTGGGTTATTGATGAGAAGAAGTGGCGACCGGGACGAGCAGAGCACTCAGTCGGCTGGCCTCTGAACAGGAACACATACGGAGGCACTTTCCTGTACCACCTCAACGAAGGAGAACCACTGGTGGCCCTGGGCTTTGTCGTAGGTTTGGACTACACTAATCCCTACATGAGTCCATTCAGGGAGTTCCAGCGCTGGAAGCATCACCCTTCGGTGATGTCCACCCTGGAGGGAGGAAACAGGATTGCATATGGAGCCAGAGCCCTCAATGAAGGAGGCTTTCAGTCAATCCCTCAGCTGACGTTTCCAGGCGGCATGTTGATCGGCTGCAGTCCAGGCTTCATGAACGTGCCCAAGATCAAAGGCACACACACGGCCATGAAGAGCGGCATGCTGGCGGCCGAGACCGCCTTCAGCAAAATCACTGATGAGAATCTGCAGTCACAAACCACAGGTAGCCGACCCACACTTCTATGCAGATTAGCTGAGGTGTAACTCACAGGATATT

Function

symbol description
etfdh Predicted to enable electron-transferring-flavoprotein dehydrogenase activity. Acts upstream of or within respiratory electron transport chain. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Used to study multiple acyl-CoA dehydrogenase deficiency. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFDH (electron transfer flavoprotein dehydrogenase).

GO:

id name namespace
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004174 electron-transferring-flavoprotein dehydrogenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0048039 ubiquinone binding molecular_function
GO:0043783 oxidoreductase activity, oxidizing metal ions with flavin as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-168 Predicted to enable electron-transferring-flavoprotein dehydrogenase activity. Acts upstream of or within respiratory electron transport chain. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Used to study multiple acyl-CoA dehydrogenase deficiency. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFDH (electron transfer flavoprotein dehydrogenase).

Ensembl:

ensembl_id ENSDARG00000038834

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015891 False 2444 mRNA 0.50 13 48070872 48103207
TCONS_00015892 True 520 lncRNA 0.54 4 48080076 48090707

Neighbor

gene id symbol gene type direction distance location
XLOC_008141 rapgef2 coding downstream 37799 47779846 ~ 48033073 (-)
XLOC_008140 fstl5 coding downstream 679788 47000351 ~ 47391084 (-)
XLOC_008139 qdpra coding downstream 1173805 46873229 ~ 46897067 (-)
XLOC_008138 ldb2a coding downstream 1238047 46678711 ~ 46832825 (-)
XLOC_008137 NA coding downstream 1395022 46629901 ~ 46675850 (-)
XLOC_008143 rxfp1 coding upstream 4009 48107216 ~ 48260744 (-)
XLOC_008144 CABZ01080056.1 coding upstream 202232 48305439 ~ 48348973 (-)
XLOC_008145 CABZ01080059.1 coding upstream 246280 48349487 ~ 48349602 (-)
XLOC_008146 CR376827.1 coding upstream 473377 48576584 ~ 48576700 (-)
XLOC_008147 si:ch211-154c21.1 coding upstream 477162 48580369 ~ 48588422 (-)
XLOC_007641 CU855896.1 misc downstream 45663032 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 45663441 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 45663800 2406945 ~ 2407072 (-)
XLOC_008136 NA non-coding downstream 1537311 46530919 ~ 46533561 (-)
XLOC_008135 NA non-coding downstream 1568680 46501879 ~ 46502192 (-)
XLOC_008131 NA non-coding downstream 1632976 46433482 ~ 46437896 (-)
XLOC_008121 NA non-coding downstream 1953513 46114660 ~ 46117359 (-)
XLOC_008148 NA non-coding upstream 562664 48665871 ~ 48708073 (-)
XLOC_008151 NA non-coding upstream 734541 48837748 ~ 48843424 (-)
XLOC_008154 NA non-coding upstream 902112 49005319 ~ 49007824 (-)

Expression


Co-expression Network