CI01000020_00648652_00656756 (SLC26A3.1)


Basic Information

Item Value
gene id CI01000020_00648652_00656756
gene name SLC26A3.1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 648259 ~ 657256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00648652_00656756.mRNA
AACTAATCAGGATGCAGCCCTTCGGCAGACAGTATGTGGTGGTCAGGCCTCTGTTTTCAGAGGATTCCTTTGCAGAGCAACACGAGAGGATCAACAGGAAACGCAAAACTCTACGGCACCATCTGAAAGACTATTTCATTTGTGATACGAATCGTGCAAAGAATGCAGCTCTTTCCTTTCTTCCAATCATTGGATGGATGAAGAACTACAACATCAAAGAATGGCTGCTGGGTGACATTGTTTCAGGCATCAGCACTGGACTAGTGGCAGTGCTACAGGGACTTGCATTTTCCTTGCTGGCCTCCTTACCACCGGGATATGGACTGTACACGGCATTCTTCCCTGCAATAGTCTACTTCTTTTTGGGCACTTCCAGACACCTGTCAGTAGGGGCTTTTCCTATTCTGAGTCTAATGGTGGGGGCTGTTGTCACACGACTGGTGCCTGATGAGGGACCCTCAGCTAACATCACTGGATTTGAAGGATTGAGCATGGAACAGCAGAGAGTTTTAGTTGCTTCCTCGGTGGGCTTCATTGTCATGTATCTGTCAGATACTCTAGTGTCAGGATTCACCACTGCAGCTGCTGTTCACATTTTGGTATCCCAGCTCAGGTTTGTGTTGGGACTGGACTTTCCTGGTATAAACGGGCCACTCGCCATTATATATACTTTGGTGGAAGTTTTTAGTCGAATCACTAACACGAATGTGGCCGACCTGGTGACATCTATTGTGATCATGGCACTGGTGCTTATTGTGAAGGAGATCAATGACAGATTCAAGTCAAAACTGCCTGTGCCAATACCTATAGAAGTCATCATGACTGTTATCGCTTGTGGAGTCTCTTATGCATTCAACTTCGAGGAGCGATTTGATGTGGTCGTGGTTGGGGAGATGGTGAATGGATATGAATCACCGGTTGCTCCAAACCTGGAAGTCATTGAAGAGAGTGCAGTGGAGGCCTTCCCTATGGCCATAGTAGGATTTGCTGTGGCTTTCTCAGTAGCTAAAGTCTACTCCGTCAAACACGACTACACGATTGATGGGAACCAGATAGCTGGAGTTCTTTCAGCCATGATGGTACTGATTGTGATTGTCGCAGTGGGATTTTTACTTGAGCCGTTGCCCAGGTCTGTTCTAGGTGCTCTGGTCATTGTTAATCTGAAAGGCATGCTAATGCAGTTTGGAGAGCTGCCGTTCTTATGGAAGAATGACCGGTCTGATTTGGTGACCTGGGTGGTGACCTTCCTGGCCTCTCTTTTTTTGGGGTTGGATCTGGGGTTGGCTGTAGGTCTTGGGGCGGAATTGTTCACTGTGGTCTGCAGGACTCAATTCCCACGCTGTTCCGTCCTGGCCAATATTACAGGAACTGACATCTACAGGGATCGCAAAGACTACATCTCTATTTCCGAACCTGACGGAGTTAAAATATTCAAAATCCCCTCACCTATCTTCTTTGCTAACATTGATTTCTTCAGAGACAAATTGGTTCAAGCAGTGGGTTTTAGTCCCCTAAGAGTGTTGAAGAAAAGGAACAAAGCCCTGCGAAAGATCAGAAAAATGTTGCAGAATGGGGAACTGGAGGTGTCAGATGGAGGCCTTAAGGTGAGACAACCATCAGCTGACACGTCAGAGGATGACAGCAGCATGGAGAGTCTGGACCAGCCCACTGATTTCTCTGGCCTTCCAATCCAGGTGAACTGGAACACAGAACTGCCTGCCAACATCTCTGTCCCTCCTGTGAACATGCACAGTTTGGTCCTGGACTTCTCTGCCGTCTCATTCCTAGATATATCTGCACTCAAGGGTCTTAAGACGACGCTAAAAGAGTTTATACGAATCGAAGTGGACGTCTACATAGTTTCATGCGATGTGTACATCATGGAGAAACTTCATCAATGTACATTTTTTGATGACGAGATTAAGACGTCCATCTTTTACCCCACACTACATGATGCCATGTTACACATTCTGGAGAAGCATCCAGATCATGGAGAATTAGAAAAGGATATAAGCATAAACTACGGAGTCATTCGGAGAGACAGTATTACTGTGTGAGGAACAGAAAACCCTGCTGAAATACTCTTTAAATCATGCCGGAAGGGTTGTGGTAAATGTTTTATGAGTGCAGCCAAACAATACGGGCAGAGATGCATTTCACCACTGTCACAGCACATTATAGGCCTATATTTTAGTCTGGCCACTGGACAGACACTAAACTCAGGCTGCTTTAAGAAAAGAAAACGCACTATTTTAGTTTACAGCAGCATACATCCATTGTTACCATGTTTACTGGTGATTTAGTGGCATTACAGTAAATGAATTCATATTGTTTGGGATTTAGTGACAGGACAAACTGTCACACGGAGCGAGCAGAAACATTGGACATTTTTGGACATTACAAATGTAATTGGTTAAAACAATATTTGGCTGAACAAGACAGATAATTAA
>TU126840
CGAATCTGCAAACCTGGAGTCCAAACAATGAGACGAGATTGCAAGTGTAGGTTAGAGTCACTCCGCTCTATATGAAAAACACAAATTTTGAGTTTACCATTCACAAGAAGCATTGCTGGATATGAACCATTCCTCAAACAAAAGAGAATATCAGTATTGTTCATTTGCAAAAAGCTTGAACGGATTACAAAAGTATCTCTGTGATGTTCATTAGTCTAAATGGAGGAAGCTAATCACTGTACTTCCATGCAGTAATTCATAAAATCATAATCCACGTGGGTTCAGATAGTTTTTTCAGCAGCTCTATTTTTATGTTTCCGTCTTGAGAAATCATGTAAATAAGGAAGAATGACTTAAAAAAAAACACATTGTTCCATCAATGATTAATGCCTGCAAAAGACAGCCCATAATAGCCTGTGATAAGACTAATGATGGCTCCCTTACAAACAAACCAGACAATATAAAGCACTCGAGATGCATCTGAAAACCAACTAATCAGGATGCAGCCCTTCGGCAGACAGTATGTGGTGGTCAGGCCTCTGTTTTCAGAGGATTCCTTTGCAGAGCAACACGAGAGGATCAACAGGAAACGCAAAACTCTACGGCACCATCTGAAAGACTATTTCATTTGTGATACGAATCGTGCAAAGAATGCAGCTCTTTCCTTTCTTCCAATCATTGGATGGATGAAGAACTACAACATCAAAGAATGGCTGCTGGGTGACATTGTTTCAGGCATCAGCACTGGACTAGTGGCAGTGCTACAGGGACTTGCATTTTCCTTGCTGGCCTCCTTACCACCGGGATATGGACTGTACACGGCATTCTTCCCTGCAATAGTCTACTTCTTTTTGGGCACTTCCAGACACCTGTCAGTAGGGGCTTTTCCTATTCTGAGTCTAATGGTGGGGGCTGTTGTCACACGACTGGTGCCTGATGAGGGACCCTCAGCTAACATCACTGGATTTGAAGGATTGAGCATGGAACAGCAGAGAGTTTTAGTTGCTTCCTCGGTTACTTTTGT

Function

symbol description
slc26a3.1 Enables sodium:bicarbonate symporter activity. Acts upstream of or within anion homeostasis; chloride transport; and response to salt stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; lateral line system; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in congenital secretory chloride diarrhea 1 and diarrhea. Orthologous to human SLC26A3 (solute carrier family 26 member 3).

NR:

description
solute carrier family 26 member 3

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00648652_00656756.mRNA False 2450 mRNA 0.45 18 648259 656767
TU126840 True 1024 TUCP 0.42 4 654708 657256

Neighbor

gene id symbol gene type direction distance location
CI01000020_00635947_00637797 NA coding downstream 9953 635637 ~ 638306 (-)
CI01000020_00589640_00593467 NA coding downstream 53949 589491 ~ 594310 (-)
CI01000020_00559356_00581137 NA coding downstream 66999 559194 ~ 581260 (-)
CI01000020_00540382_00550204 IMDH1, IMPDH1B, IMPDH1, IMPDH1A coding downstream 97338 540264 ~ 550921 (-)
CI01000020_00222688_00225252 LRRC4.1 coding downstream 422726 222499 ~ 225533 (-)
CI01000020_00668211_00680679 SLC26A3.2 coding upstream 11102 667869 ~ 680760 (-)
CI01000020_00686072_00697099 SLC26A4 coding upstream 29069 685836 ~ 697489 (-)
CI01000020_00734012_00742045 WNT7BA, WNT7BB, WNT7B coding upstream 76850 733617 ~ 742045 (-)
CI01000020_00771062_00774260 NA coding upstream 114192 770959 ~ 774524 (-)
CI01000020_00901339_00902642 NA coding upstream 244460 901227 ~ 902642 (-)
G111625 NA non-coding downstream 62206 584212 ~ 587067 (-)
G111618 NA non-coding downstream 86927 561085 ~ 561332 (-)
G111602 NA non-coding downstream 90864 557162 ~ 557395 (-)
G111379 NA non-coding downstream 146867 467312 ~ 501392 (-)
G111641 NA non-coding upstream 1044 657811 ~ 658038 (-)
G111643 NA non-coding upstream 3432 660199 ~ 660423 (-)
G111645 NA non-coding upstream 4215 660982 ~ 661226 (-)
G111657 NA non-coding upstream 72380 729147 ~ 729982 (-)
G111699 NA non-coding upstream 99531 756298 ~ 757721 (-)
G111638 NA other downstream 730 645989 ~ 647529 (-)
G111351 NA other downstream 541275 97024 ~ 102468 (-)
G111674 NA other upstream 158613 814110 ~ 887919 (-)
G111774 NA other upstream 316841 973608 ~ 974641 (-)
CI01000020_01463785_01480876 GNPTAB other upstream 823377 1463771 ~ 1481058 (-)
G112136 NA other upstream 1461596 2040034 ~ 2121232 (-)
CI01000020_02121873_02122329 KISS2 other upstream 1464981 2121714 ~ 2122619 (-)
G111639 NA non-coding downstream 4629 649648 ~ 650079 (-)

Expression


Co-expression Network