CI01000020_00810993_00815495 (CDPF1)


Basic Information

Item Value
gene id CI01000020_00810993_00815495
gene name CDPF1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 810899 ~ 816510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00810993_00815495.mRNA
GATGAGGACCGCGCTTTAGTGCGAATGGATTTTACCGAAGGATCCGCGCTCGGCGTGTTCACCTGTGAGCTGTGCGAGCTGTCCAGTCCGTACAGTTTCTACGGGCAGAAGCCGCCAAACACGAGAGCAATAGTGCTCTTAGAGGAATGTTATGGCATGAAGGATCCCTTCAGCCCGGAGAGAGAGAAGTTTCTTGTTCTAGGATCCAAGTGCTGTCTGTGCAGTAAGACGGTGTGTGTGGGAACGGACTGCAGTCTGTTCTACACCAAACGCTTTTGTTTGCCATGCGTGCGGGATCACCTTCATCAGTTTCCAGAACAGGTTCAAAATGAGGTGCTGAGGAAGAAAAGTGTGCAGAAGACGTCCGCCTCATGATGATATATTGATTTATTTATGAACAGAGGACACTAGTGAACCATCTGGCCAGACACACATGTACATTTTTTTTTGTCTGTTGTCCTTTTTCTATTTATATGAATCAAACAACTGAAGGTGGCAAGCCATCTTTTGATTGAAACCATATGTTATGTGACATTTTTAGTTTTACAATAGCACTAAATGTGTTGTCTTACGTGTAGAAACTATGAA
>TU125804
GTGACGTTATAGCACTATGGCGTGCCTTCAGAGCGCGTGCTCACTCAAAACAAACAGTTAGGATTTCTTTGAACGGGATAATGGCATTGTGCAGGATGAGGACCGCGCTTTAGTGCGAATGGATTTTACCGAAGGATCCGCGCTCGGCGTGTTCACCTGTGAGCTGTGCGAGCTGTCCAGTCCGTACAGTTTCTACGGGCAGAAGCCGCCAAACACGAGAGCAATAGTGCTCTTAGAGGAATGTTATGGCATGAAGGATCCCTTCAGCCCGGAGAGAGAGAAGTTTCTTGTTCTAGGATCCAAGTGCTGTCTGTGCAGTAAGACGGTGTGTGTGGGAACGGACTGCAGTCTGTTCTACACCAAACGCTTTTGTTTGCCATGCGTGCGGGATCACCTTCATCAGTTTCCAGAACAGGTTCAAAATGAGGTGCTGAGGAAGAAAAGTGTGCAGAAGACGTCCGCCTCATGATGATATATTGATTTATTTATGAACAGAGGACACTAGTGAACCATCTGGCCAGACACACATGTACATTTTTTTTTGTCTGTTGTCCTTTTTCTATTTATATGAATCAAACAACTGAAGGTGGCAAGCCATCTTTTGATTGAAACCATATGTTATGTGACATTTTTAGTTTTACAATAGCACTAAATGTGTTGTCTTACGTGTAGAAACTATGAAATAAATGTTTAGCTGTGTTATTGGCTCACTGGTTGTGACTGATTACAGGTGATTAAAGTGAAATGATATAGATGAGGCTCGAACCTGTTGTTGGAGGAGTGCAAGATTGCTGTGAGTGTGGGCAGTACCCCTACACCACAGCTGAGGAACTACTTGCTTCCAGATTTTCCACCTTGACTACTAAGCCCAACTTGTTTAGTAGCAAAAAACACAGGTGAGTAGTGAACTATAAGTTCCAGCACATGCATAGTAAGAGATCTGTGGCTCGGTGGTAGAGCACTGGCACACAATGCCAGAGGTCACTGGTTCAAATCCAGCCAGATCTTGGAGCAGAGTGGCTGACCAGACCGAGGATGGAGCAGTGGAGACTGAGGCGGAGCGGCTGACCGGATGGAGCGGAGCGGCTGACCGGATGGAGCAGAGCGGCTGACCGGATGGAGCAGAGCGGCTGACCAGACCGAGGATGGAGCAGTGGAGACTGAGCGGCAGACCAGACCCAGGATGGAGCAGTGGAGACTGAGGCGGAGCAGCTGACTGGATGGAGCAGAGCGGATGGATGGAGCGGAGCGGCTGACCAGACCGAGGATGGAGCAGTGGAGTGGAATGGCTGACAGAGCAGAGCAGCAGACCAGACCAAGGATGACTGGATGGAGGAGCAGACAGAACAGCGTGTGGAACAGGAAACTGAAGTGGTGAGACATCGGTGAAGAGGAGAGTGAAGTCAGCACCCGAAGAAAGAAGAAGGGGGACCATGACCTGGGTCCCCCCCCCGGCCTCTGGGACAATGACCAGCAGCGGTTAT

Function

symbol description
cdpf1 Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00810993_00815495.mRNA False 588 mRNA 0.45 3 810993 815708
TU125804 True 1484 TUCP 0.50 3 810899 816510

Neighbor

gene id symbol gene type direction distance location
CI01000020_00798124_00809552 PPARAA coding upstream 936 797612 ~ 810057 (+)
CI01000020_00752731_00769950 NA coding upstream 40966 752694 ~ 770027 (+)
CI01000020_00715984_00729331 ATXN10 coding upstream 81032 715984 ~ 729961 (+)
CI01000020_00701439_00712656 DEF6C coding upstream 98168 701439 ~ 712825 (+)
CI01000020_00643857_00646974 CBLL1 coding upstream 163434 643857 ~ 647559 (+)
CI01000020_00819154_00820506 NA coding downstream 3141 818849 ~ 821273 (+)
CI01000020_00892454_00900973 RINT1 coding downstream 76746 892454 ~ 901051 (+)
CI01000020_00934438_00935330 NA coding downstream 118730 934438 ~ 935356 (+)
CI01000020_00949140_00951237 SOCS2 coding downstream 133048 948756 ~ 952785 (+)
CI01000020_00959078_00971223 CRADD coding downstream 143370 959078 ~ 971999 (+)
G110714 NA non-coding upstream 250786 558921 ~ 560207 (+)
G110783 NA non-coding upstream 254724 556039 ~ 556269 (+)
G110780 NA non-coding upstream 257553 553189 ~ 553440 (+)
G110732 NA non-coding upstream 267857 542600 ~ 543136 (+)
G110741 NA non-coding downstream 72420 888128 ~ 888384 (+)
G110808 NA non-coding downstream 77234 892942 ~ 893173 (+)
G110822 NA non-coding downstream 153685 969393 ~ 970349 (+)
G110742 NA non-coding downstream 159163 974871 ~ 975583 (+)
G110738 NA non-coding downstream 159961 975669 ~ 976633 (+)
G110589 NA other upstream 584145 180778 ~ 226848 (+)
G110562 NA other upstream 762953 30693 ~ 48040 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 252348 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 560661 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 1628536 2443278 ~ 2444944 (+)
G111183 NA other downstream 1831803 2647511 ~ 2658913 (+)
G112679 NA other downstream 2485463 3301171 ~ 3303730 (+)

Expression


Co-expression Network