CI01000020_00919569_00931298 (CFAP54)


Basic Information

Item Value
gene id CI01000020_00919569_00931298
gene name CFAP54
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 919569 ~ 931298 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00919569_00931298.mRNA
GTCCATAAAACTCTTTGAAACATGGAACAAGTATAAATCTCGCCTTCCTCCCTCTTATTTCGAAGAGCACCTGTTGCAAACTGCAGATTTCCTCTTTGACACCAAGCTATACAGGCTTGCTCTCTGGCAAGGGTACAGACTCTATCTGCAGCAGTTTTGCACACTAAACCTAGAAAGCATACGAGATGTGGAGCACTTCAAGCAGTCCTACTTCTCAGACGGCTTTGATTCAAAGAGAGCCCGACTTACGGGAGAATGCCAGTGCATCTTCCATTTGGAGAGAGGGAAAAGTGCACTGCCAGACCAGAGAGGGGTTCAAAAGTTGCTGAGCATCCTGGGATTAATGAAAGTACAGAAGCAGATTCTCAGGAAAAAAAGTGGAGCGCGCGTCATATCCATAACAACGGATTCAAACACAGTAGCTCGCCTCGCACGCGCAGTTGGAAACATGGACCCTTCACCAGCATCCTACTACGGACCCCTGGATAAAAGCAACCCTGTACTGTCCGCTTTTCAAAGTGACTTAAAAGAGTTTAAAGCGCATATAAAGAAACTTTCATGCTCGCCGAACGACGACTACCGATCCTACTCCAGAGGGTCCATAAAACTGTTTGAAACATGGAACAAGTATAAATCTCGCCTTCCTCCCTCTTATTTCGAAGAGCACCTGTTGCAAACTGCAGATTTCCTCTTTGACACCAAGCTATACAGGCTTGCTCTCTGGCAAGGGTACAGACTCTATCTGCAGCAGTTTTGCACACTAAACCTAGAAAGCATACGAGATGTGGAGCACTTCAAGCAGTCCTTCTTCTCAGACGGCTTTGATTCAAAGAGAGCCCAACTTACGGGAGAATGCCAGTGCATCTTCTATTTGGAGAGAGAGAAAAGTGCACTGCCAGACCAGAGAGGGGTTCAAAAGTTGCTGAACAACCTGGGATTTGTGCGCATTCTGATGCAGGCTGTTCTGCCTGATGAAAGTTTATGCTGGATCCTGTACAATGGCTCGTTACACATGTATAACGTTTTAGAGTACTTACTTTGGGCATGCACTTGTCTTGAGACCTCTATTACTCTGCTGACTGCCAACTTCCTACCATGGAGGGCCACACTTTACTGTGCTGTGTGTGAATGTTACTTTCAAGACTCTGCTTCAGTTCAGGCAGAGGTGTTTGCTCGCCGAGCCCTGAGCAAGATCAGCGAACTGGCCAAGCTGGAGGAGATGACTGGCTCCCAAGTGTCATCTGAGACCCAGCAAGCTTATAAGGAGGCCACAATAAAAACTCCATGGCCTCGCACACCAACCGAGCGTATCCTGATGGAGATGTTTGAGGGGAATTCTGCTCGGTTTCTGGCTGTACTGGAAGCTCTACAGGACAGCTCTGTCAGACCTCTGCAGACCGGCATGCCTGAAGAATTCGAGGTCCAGGACGTGGTACTGGAGCTCATTTCGGCTGGCACTAGCTTGTTGTCCGGATTTGGTGATTCTGAACACACTTTTGATAAGAGCATGCCTCCTTCTGTGAATGCACTCACTCCTACTTCCTCTCTCTTTGACACAGCTGTCGCTGGAAATAGTAAGATTGCAGTAGATGCTGCAGTGAAGTTTGTGAAGCAGCTCTTCAGATATGAACAGTGGAGCACGTTCAGCTCGCTCTCTTCTGCACTTATGTCAGCGTTAGCTAGCATGGATGGCCGCCCGTTTAGGAAGTATGAGCAGGAACTGAGGCTTTTGGAGGCTGTGGAGCGTTTGTTTTCCACTCAAAGAGTAAAATTCACCATGAAAGATGCTGCTTTTGATGGTCAAGCTGACAAGAATATTGGTCCAGCAATCATGACAGAAGAATTTTTCAATCTTATTCAGACACTTCATACTTGTGTCTGCAGGACAGACAAGGATATCCAGCCAGATGCAGACTTGGTGTTGGACATCGTGCTCTTCTTTTGGGCTAAATGCAAAACAGTTTTTCAAAGAGCGCAGATGAGGCACTATGACCCTGTGCACTACCGGGGAAGGATGGCAAACCAAGACCAGTGGGTGGAGACCCTGCTCTTGCTGTGTGAAGTGGCCCATGAGCACCAGCTGGCTGAAGTAGACTTCTTATTAGTGGCCGAAATGACTCTCAGAATTGCCATGGTGTTGGAAAGCAGCATGGATGCCCTGCAGTCCGGGAGAAAAACAGCCACCACTGTAGATAGTGAAGAGTCCATCCCTGTTAGAAAATCTGCAAGCTCCCTGTTTATGAAGTTTGGTAACTACAAGAGTTCCAAGAGCAGCAGAGTCCCAGAGAGCAGCAGTACCACTGACCTTACTGCCCTTTCCATGGATTTACACCTAGAACTACTGGTCTTCCAGCACAGACTCGCTCTCAAACTATTTGACTCCTGGCCAGAAGAGTTGAGTTTGATGGAGAGTAAGAAGTCACATACTAATCGAACGAAGACCTCAGAAACAAACAGACCTGTAGAAGACTCTGCGGTACTTGAAAAAATCAAGAAGAACAAGATCTCTAAGAGTGTTTTCCTGGCACAGAAGGCCTTATTGACATTCAGGAAGGATCAGACTAGCCGAGAGACCAAGAAAATACTTGAGGAGGCCATAACGCTGATGGAGAAAGCCGAGCTGGAAGAGAGGAGGCTGGCTTGTTGTATGTTTCCTTCAGAGAACAGCTTAGGACTGGCAGAGAAGAGACAGCCACCGCCAACTCCAATACTCCTGACACGATCAAACCGCTCCATGATCTTCACACCTGCACCATACGCACTGGAGGAGGAGGTTAGCTGGTATTGTATTTATGCAAGAGATGCAGAGGGTGTCAACCTAAAAGTACGACTTAAAGACTGCTACCTATGTGGGACTGGAGAAATGATACCTGCCAGCGGTGAATGTTTACTTCACGTAAGCGGGTTGAAACCTGATAAGAAGTACATTTTTGCAGTGGCTGCTTTTGATGCTCAGGGCAAAATGGTGGGCGGAGCCATTGGAGAGACCACCAGGCCTCTACTGGCCTCCTTGCCTCTTCCACTGCTAACAACCTGGGCCCACATAGCTCAGCAGCTGTTTTTCTCCACTATTTTCATCCAGACAGATATTCACATCCAAGAGGGGGCACTATTCTGTGACAGCCTCTGTGATGGGGGGCCTTTGATATGGGGCCAG

Function

symbol description
cfap54 Predicted to be involved in cilium assembly; cilium movement involved in cell motility; and spermatogenesis. Predicted to act upstream of or within cerebrospinal fluid circulation and mucociliary clearance. Predicted to be located in axoneme.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00919569_00931298.mRNA True 3157 mRNA 0.48 25 919569 931298

Neighbor

gene id symbol gene type direction distance location
CI01000020_00903124_00916916 NA coding downstream 2653 903106 ~ 916916 (-)
CI01000020_00901339_00902642 NA coding downstream 16927 901227 ~ 902642 (-)
CI01000020_00771062_00774260 NA coding downstream 145045 770959 ~ 774524 (-)
CI01000020_00734012_00742045 WNT7BA, WNT7BB, WNT7B coding downstream 177524 733617 ~ 742045 (-)
CI01000020_00686072_00697099 SLC26A4 coding downstream 222080 685836 ~ 697489 (-)
CI01000020_00936240_00942015 NCAPH2 coding upstream 4512 935810 ~ 942015 (-)
CI01000020_00996310_01006955 PLXNC1 coding upstream 65012 996310 ~ 1006955 (-)
CI01000020_01011931_01030587 NA coding upstream 80633 1011931 ~ 1031474 (-)
CI01000020_01033833_01045061 NA coding upstream 102535 1033833 ~ 1045734 (-)
CI01000020_01048657_01058122 NA coding upstream 117359 1048657 ~ 1058122 (-)
G111670 NA non-coding downstream 19220 898205 ~ 900349 (-)
G111694 NA non-coding downstream 26787 888992 ~ 892782 (-)
G111762 NA non-coding downstream 31147 888128 ~ 888422 (-)
G111674 NA non-coding downstream 31650 814110 ~ 887919 (-)
G111720 NA non-coding downstream 130108 788939 ~ 789461 (-)
G111769 NA non-coding upstream 25121 956419 ~ 956733 (-)
G111773 NA non-coding upstream 43754 975052 ~ 975584 (-)
G111775 NA non-coding upstream 44431 975729 ~ 976452 (-)
G111781 NA non-coding upstream 52020 983318 ~ 983567 (-)
G111782 NA non-coding upstream 54239 985537 ~ 985870 (-)
CI01000020_00648652_00656756 SLC26A3.1 other downstream 262313 648259 ~ 657256 (-)
G111638 NA other downstream 272040 645989 ~ 647529 (-)
G111625 NA other downstream 332502 584212 ~ 587067 (-)
G111351 NA other downstream 812585 97024 ~ 102468 (-)
G111774 NA other upstream 42310 973608 ~ 974641 (-)
CI01000020_01463785_01480876 GNPTAB other upstream 548846 1463771 ~ 1481058 (-)
G112136 NA other upstream 1187065 2040034 ~ 2121232 (-)
CI01000020_02121873_02122329 KISS2 other upstream 1190450 2121714 ~ 2122619 (-)
CI01000020_02828968_02849511 NA other upstream 1913002 2828763 ~ 2849518 (-)

Expression


Co-expression Network