CI01000020_00959078_00971223 (CRADD)


Basic Information

Item Value
gene id CI01000020_00959078_00971223
gene name CRADD
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 959078 ~ 971999 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00959078_00971223.mRNA
CATACTTCGGGGTTTTAACTCGGTCATCGGGTTCGAACATGGACCCAAAACACAAAAAACTGCTCCGATCTCAGCGGCTTTTTTTGGCTGAGGAGCTTTTAGTGGACGACATGATCATACAGTATTTATATCAGGAGGAGATTTTAACGGAGAGTCATTTAGAGGAGATTGAGTCTGAGTCGTCTAATAGGAAAAAAACGTTAAAGCTGCTTGATATTCTCCCCACTCGCGGCTCGCGCGCCTTCCATCACTTTACTCAGTCGTTAGAGAAAGATTTCCCCTGGATCAAAGATAAATTACTGCGACTGTGTGCGGAAGACACCGAGTCTCCTCCTCCGCCGTTCACAGTTACTGAGCTGAAGATTTTATTGACTTACTGTGGTTCAGATGGTAATATATTGGGGGATGGGTCTGATTTCCAGGAACATTGGCTTGCGGAGAGTCTTCCTGTCAGAATGTGGAAGCTGGCTGCAGTGCTAGGCCATTCCAGCTGGCCTCTACAGTCGGATGTACACAGCCAGGAGGAAACAGGAACATTACTGTCACATTGTGATGATCAAGGCTTCATTACATTCTTAAAGTGTACAATCTGTACGCTCCAGCAGCCTGTAGTTAAGCGTCCACATGTACGCTTGGAAATTGAAGCTGGAATGCTTCATCCTATAAAAAAGAAGCAATTCTCAGAAAAGTTAAGCATTTCGCTGAAACCCAGGCAATGTTCTTTGCAGATTCAGTGTGGCGTACCTGACCACATCCTTCCGACCGTTCCAACCATGCTGCATCTGAACCAACTGGCTGCTTGTCTGGGTTCGGAATGGAAATCTGTGCTGCTGGACCTGGGCCTGTCCTCTGCGGATCTGTACCGGTGCTGTGCGGACAACCCCCTCGCGGTTCAGAGTCAGGTGCTCGCGGGGCTGGTGATGTGGACGCAGAGGAACGGAAGAGAAGCCACAGTGCGGCGGCTGCTCCAGAGCCTGCAGGCCACAGACATCCTGCCATCTGTCCTCCAGCAGGTGTTTGTGTAACGTCATGAATCCTGTTTTCTGGACTTCACCATATACTGCTCTTGAGCTGTGGAAAACTCATGCTCTTGACACTGGAGGAAGAGAGAGAGACAGTGTCCTTGCATGACATTTATATTTTGTTAAGGAATACACTGAAAATCCACCATACATCTATGACAGTCTACAAAAATTATGAAATTGATCATGTCATACTGTTTTTATATCTATGCCTATTAATATTAAAATTATCATCTTTTAAAAATATGCTTCCAAAATGGTACAGAAATTACCCACTTCACATACATTTTTTTGCATTGTATTTTTTTGATGCAAATATTGCCTTGCTTTGCTGGTAACCTAGAAGTTAACATTTTACGGCAGTAGTACAATACTTTCATACATTTCACAATACTTCACATACATTCATGAGAAAACACTGTTTTATAATATTTTGGTAAACAGTGTTTCCTGTCCCAGATAACATCTGTCCTTGATGAGGTGAGATGAGTTCATGCAACTTTATGCAATCTTTATTTGAAACTATTTACCAGCTGCTTGCTGATACATGTGATGTACTTCTCATTCAGAAACAGGTTGTTCTGCCCACTGCTTCCACCCAGTAATAACACTTTAAGCACCCACATGGAAGTGGGGGTGAATGTTTATTTTTTATTTTTTTTAAGAAGGGGAATGTCTGTCTTGTTAATATTTGTTATTCTCCTTTTGGTGCTTTATGCAATTGCAACAGCGAAACACTTTCATAAGTTAAACATTGATTCATCTCCAACAATTTAACA

Function

symbol description
cradd Predicted to enable death domain binding activity and protease binding activity. Predicted to be involved in positive regulation of NF-kappaB transcription factor activity. Predicted to act upstream of or within regulation of apoptotic process and signal transduction. Predicted to be part of CBM complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human CRADD (CASP2 and RIPK1 domain containing adaptor with death domain).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process

KEGG:

id description
K02832 RAIDD; CASP2 and RIPK1 domain containing adaptor with death domain

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00959078_00971223.mRNA True 1801 mRNA 0.43 6 959078 971999

Neighbor

gene id symbol gene type direction distance location
CI01000020_00949140_00951237 SOCS2 coding upstream 6293 948756 ~ 952785 (+)
CI01000020_00934438_00935330 NA coding upstream 23722 934438 ~ 935356 (+)
CI01000020_00892454_00900973 RINT1 coding upstream 58027 892454 ~ 901051 (+)
CI01000020_00819154_00820506 NA coding upstream 137805 818849 ~ 821273 (+)
CI01000020_00810993_00815495 CDPF1 coding upstream 143370 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 coding downstream 111231 1083230 ~ 1107257 (+)
CI01000020_01120223_01142481 UHRF1BP1L coding downstream 148224 1120223 ~ 1142573 (+)
CI01000020_01147997_01150696 NA coding downstream 175546 1147545 ~ 1150963 (+)
CI01000020_01187688_01253805 NA coding downstream 215580 1187579 ~ 1254010 (+)
CI01000020_01275836_01316392 ANKS1B coding downstream 303837 1275836 ~ 1316392 (+)
G110808 NA non-coding upstream 65905 892942 ~ 893173 (+)
G110741 NA non-coding upstream 70694 888128 ~ 888384 (+)
CI01000020_00752731_00769950 NA non-coding upstream 170452 752694 ~ 770027 (+)
G110714 NA non-coding upstream 398871 558921 ~ 560207 (+)
G110783 NA non-coding upstream 402809 556039 ~ 556269 (+)
G110742 NA non-coding downstream 2872 974871 ~ 975583 (+)
G110738 NA non-coding downstream 3670 975669 ~ 976633 (+)
G110836 NA non-coding downstream 55445 1027444 ~ 1066165 (+)
G110743 NA non-coding downstream 85442 1057441 ~ 1068884 (+)
CI01000020_01375811_01378288 AVPR2L non-coding downstream 402458 1373164 ~ 1379068 (+)
G110589 NA other upstream 732230 180778 ~ 226848 (+)
G110562 NA other upstream 911038 30693 ~ 48040 (+)
CI01000020_02444149_02444833 NA other downstream 1472245 2443278 ~ 2444944 (+)
G111183 NA other downstream 1675512 2647511 ~ 2658913 (+)
G112679 NA other downstream 2329172 3301171 ~ 3303730 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028712 cradd coding NC_007115.7 CM002888.2 18383253 ~ 18416566 (-)