CI01000020_00996310_01006955 (PLXNC1)


Basic Information

Item Value
gene id CI01000020_00996310_01006955
gene name PLXNC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 996310 ~ 1006955 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_00996310_01006955.mRNA
TGAACGGCGTTATTTGGGCAGGTGTGTTCAGTGCGCAGAATCAGCAGGATCCGGAGAACACCGCGCTGGCTCTGTACGACATCAGTACAGTTAAAGGCCGAGTGAAGGGTTTCTGCTTTACTGGTGAAAGGCCATGTGGTTCTGAGCTTATGTTAGATGAGAACTTCAAACCAGGCTGTCGAATAGTGCTGTACAAATCTGATGATGAACGAGCAGTGTTTCCCAGAATGCACTTTGATCCAGTAGATTTCAAACATATCTACATTGCTTTGAGGAAACAGCTCAGAAGAGTGTCTGTGGTTCAGTGTGCTAACTACAGCACTGTGAAAGACTGCAGAGCTGCTCTGGATCCTCTCTGCGGCTGGTGTGTGAAAACACAGAGATGCTCCACCCAAGATGAATGTTCAAAATCTTCATGGATGTCCACCCCAAAAGACTCTCTTCAGGAACCTCTGGTTTCTTTTCAGGCTTGGGCTGACAAATCTTCCAGAAAGATTACTCTACATCTTGCCTTGAGTCTGGAGAGCACAGGAAATCCCATCTTCTCATGTTCCTTCACCACAGGAAGTGTGAACCTGTGTGACGGGTCTGACCTGACTGCAGTTTTCCCAAACTGCCACTGTAGTATTTCTGACCAGCTACTACATACTGGAGATTTCTCAGCTATAGTTGCTGTTGAGGATCAGAAGATCACAGAGACACTGACACTGAGAAACTGCTTGAATATCACAGATAATTCACCAAATCATTCATATACACAGTGTGTGCAGTGTATCTCATCTGGGTGTCAGTGGTCCTCTTCCTCCCTGCGTTGTGATTGGACACAAGGATCTGGACCGCAGTTACACATACAGCTTATGTTGGATGAGAACTTCAAACCAGGCTGTCCAATAGTGCTGTACAAATCTGCAGATGAACGAGCAGTGTTTCCCAGAATGCACTTTGATCCAGTAGATTTCAAACATATCTACATTGCTTTGAGGAAACAGCTCAGAAGAGTGTCTGTGGTTCAGTGTGCTAAATACAGCTCTATGAAAGACTGCAGAGCTGCTCTGGATCCTCTCTGTGGCTGGTGTGTAAAAACAAAGAGATGCTCCACCCAAGATGAATGTTCAGAATCTTCATGGCTGTCCACCCCAAAAGACTCTCTTCAGAAACCTCTGGTTTCTTTTCAGGCTTGGGCTGAAGAATCTTCCAGAAAGATTACTCTACATCTTGCCTTGAGTCTGGAGAGCACAGGAAATCCCGTCTTCTCATGTTCCTTCTCCACAGGAAGTGTTAACCTGTGTGACGGGTCTGACCTGACTGCAGTTTTCCCAAACTGCCACTGTAGTATTTCTGACCAGCTACTACATACTGGAGATTTAAAAGTCTCAGCTATAGTTGCTGTTGAGGATCAGAAGATCACAGAGACGCTGACACTGAGAAACTGCTTGAATATCACAGATAATTCACCAAATCATTCATATACACAGTGTGTGCAGTGTATCTCATCTGGGTGTCAGTGGTCCTCTTCCTCCCTGCGTTGTGATTGGACACAAGGATCTGGACCGCAGTTACACATACAAGATTCATGTAAAGATCTGCTCTCTGAAATGGACTATACAGAGCCAGAGATTTTCTCTCTGGAGCCCAACAAAGTTTCCTTCCATGGCAGAAACAATGTTTTACTAAGAGGAAAGAACCTGGAATCTGTCACTAAAATCCGTATTCAAGGGGATCTGGACTGTATTCCTAAAGAATCTCCAGTGTTTAATCGCTCCAGTGACACTTTAAGGTTCCACATTCCTCCCAGTGGATCTAAAGGAACAGTGAAAGTGTGTGTTGTTACTTTTGACGATCGTTGTCATGGTAACAGCATCATCACTTACAGTTCCCAGCCCAGCTGCACAGGAATACAGCCCACA

Function

symbol description
plxnc1 Predicted to enable semaphorin receptor activity. Acts upstream of or within regulation of GTPase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Orthologous to human PLXNC1 (plexin C1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_00996310_01006955.mRNA True 1907 mRNA 0.45 16 996310 1006955

Neighbor

gene id symbol gene type direction distance location
CI01000020_00936240_00942015 NCAPH2 coding downstream 54295 935810 ~ 942015 (-)
CI01000020_00919569_00931298 CFAP54 coding downstream 65012 919569 ~ 931298 (-)
CI01000020_00903124_00916916 NA coding downstream 79394 903106 ~ 916916 (-)
CI01000020_00901339_00902642 NA coding downstream 93668 901227 ~ 902642 (-)
CI01000020_00771062_00774260 NA coding downstream 221786 770959 ~ 774524 (-)
CI01000020_01011931_01030587 NA coding upstream 4976 1011931 ~ 1031474 (-)
CI01000020_01033833_01045061 NA coding upstream 26878 1033833 ~ 1045734 (-)
CI01000020_01048657_01058122 NA coding upstream 41702 1048657 ~ 1058122 (-)
CI01000020_01060900_01081919 NA coding upstream 53945 1060850 ~ 1081919 (-)
CI01000020_01346335_01369381 APAF1 coding upstream 338952 1345648 ~ 1369381 (-)
G111784 NA non-coding downstream 7814 988271 ~ 988496 (-)
G111782 NA non-coding downstream 10440 985537 ~ 985870 (-)
G111781 NA non-coding downstream 12743 983318 ~ 983567 (-)
G111775 NA non-coding downstream 19858 975729 ~ 976452 (-)
G111773 NA non-coding downstream 20726 975052 ~ 975584 (-)
G111668 NA non-coding upstream 42032 1059126 ~ 1070672 (-)
G111673 NA non-coding upstream 76591 1083546 ~ 1084259 (-)
G111806 NA non-coding upstream 118155 1125110 ~ 1126738 (-)
G111816 NA non-coding upstream 139870 1146825 ~ 1147048 (-)
G111774 NA other downstream 21669 973608 ~ 974641 (-)
G111674 NA other downstream 177923 814110 ~ 887919 (-)
CI01000020_00648652_00656756 SLC26A3.1 other downstream 339054 648259 ~ 657256 (-)
G111638 NA other downstream 348781 645989 ~ 647529 (-)
G111625 NA other downstream 409243 584212 ~ 587067 (-)
CI01000020_01463785_01480876 GNPTAB other upstream 473189 1463771 ~ 1481058 (-)
G112136 NA other upstream 1111408 2040034 ~ 2121232 (-)
CI01000020_02121873_02122329 KISS2 other upstream 1114793 2121714 ~ 2122619 (-)
CI01000020_02828968_02849511 NA other upstream 1837345 2828763 ~ 2849518 (-)
CI01000020_03304491_03309596 UBE2H other upstream 2297945 3300912 ~ 3310248 (-)

Expression


Co-expression Network