CI01000020_01187688_01253805


Basic Information

Item Value
gene id CI01000020_01187688_01253805
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1187579 ~ 1254010 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_01187688_01253805.mRNA
TTATTTAAGCGTTTCTCTCTCTTTCGACTTCTCCACGTCTATTCATATCCTCCTCTTCAATAACCCTCCCTCATGCGCTTCCAACTACTCAAGATTCCAGTGTGTAGCTATGCCAATTAGTTCTGCGCTGCTGTGTGTGTGTGTGTGTCAGACTATTGGAATGTCTATTTATGGCAGCATGGGACACTGTGTGTGTGTGTGTGTGTTTCCTGTTGTCCTGCGATTGGTCAGTCATGTTGTGAGTTATATCGTGGGTCGTGGCCTTTGTCCTCCTCATGTCTGTCTGGGTATGTGGAGAGGCCTCAATGTGAACTGTGCAGACGGCTCAGGATACACACCTCTGCATCACGCGTCTCTAAACGGACACAGGGACGTGGTGTTGAAGTTGTTGCAGTTTGAAGCTTCCACTAATGTGGCAGACAGTAAGGGCTGTTTTCCTCTGCATCTGGCCGCATGGAGAGGTGACGTGGACATAGTCCAGATACTGATCCACCACGGGCCGTCCCACAGCAGAGTTAATGAGCAGGCTGAAAAAGGGAGATTAAAGGAAGAAAGGCAGGGCAGAGAGTATGAGAGAGCGATAGAGAGAGCGAGAGAAATCTGTCTGCAGTATCAGGAGCTGACAGACCCCAGCATGAGGAACAGTCGCGGGGAAACGCCGCTGGATCTGGCTGCCCTGTATGGCCGGCTGCAGGTGGTCCGCATGCTACTGACCGCCCACCCCAACCTCATGAGCTGCAATACGCGCAAGCACACACCTCTACATCTGGCCGCACGGAATGGCCATTACTCTACCGTTCGAGTGCTGCTGGAGGCCGACATGGACGTTAACACACAGACAGAGAAAGGAAGTGCTCTCCACGAAGCCGCTCTCTTCGGAAAGATGGATGTAGTTCAGCTACTGCTTGACTCAGGGATTGATTCCAACATCAGAGATAGCCAGGGAAGAACTGCTCTAGAAATACTGAGAGAACATCCGTCACAGAAATCACAACAAATTGCTTCTCTTATACAAGATTATATGATGTCAGATTGTGACAGAGGGAATTTCCACGAAGATTTAGCACAGCAGCGCCCAATACCAACACCACGCACATCAATACCCTCACCTGTGCCCTCCCCGTCTCTGCGGCATAAAAATGACGCAGTAACAGGGGAGTTGTCCAAGTTGCTGAATGAAATAAAGATCTGCCGTGATAAGGATTGCTCCTTTGAGGAGCTGTGTCAGACCATCTCTTCTCACTCTCAGTCCATGGAGAGCTTCGGCAGTGGGCGTCTGTCTGACGAGGAACGGAACGGCACTCTCACTCGAATAAACAAGCGGCCCACTCCCCCATTGCCCCCGGCTATGGAAGAGGAGGAAAAGAGCTGCGGACCATCAGGCCTGTGGGAGGCGCTCACTCCCTGCAACGGCTGCAGAAATCTGGGCTTTTCTCAGGACAGTCGATGTGGTGAAATTGCCCATTCTCCATCATTGGACGTGTTTTTACCAGAGGATGAGGACAACCCTTACGAGTCAGTGGCTACAGCTGTCACACGCAAACCCTGCTCTCTGGACATCCAACTCCACAGCGCCTGTCCTCGCAACGGGTCAAGCCCCACTGAGCTTCCTAACACAGTCACAGAGCTGCCCGCTGTTATCGCAAAAACAGCTGTGAGCAGTTTTGACAGAGTCACACTCTTTCCCACCAGCTCCGTCAGTGGTGAGTTTATTGTGAAACATGCTAATGTTTCAGATGTGTACAAATTGGCAATCAAAGGATATGAAAAACAGAAGGAAAGGAAGATGAGGAGGGTGTTGAATAAATGTATGCAGCTTGGATTCGTCTCTGATTTTGTCCGGATGGATGCCGTAGGGCTTATTGACTCACTTGGCCACTTCTCACACGTGTCGGTCAGTGATGCAGAGCGAGGTAACCATGGTGACGACTCTACAGGCCTGACTCCTGACTGCTCGCCTCCTTCACCTGATACGGCCCTGAGGAACATAGAAAGAGTCATCCGCCCCCAGCTTTGCCTCCGTTGTCATGGAGACGGTAGTTGTATTGAAAAATCGTCAGTGAAGGCAAGCATCAGAATACCACTAAACATAGGGGGGACGTCCAGAAACCTCTACAGAACCACAGCTGCGAACCTTCGGAGGTCAGCTCATCTCTTGGCTACGCCAGCTTCAGCACCAGCCCCCCCGCCAGCCCCCCCATCAGCCCCGCCAACTGCTCCACCGGATCCGCCGAAGACTACGGCCTCACTGCATCCACCTACGGCACTGCTGGTCGAGTGGGCAGTTGATGCTGTTTCCATGGCAATGTCATTCCTGGTGCTGAGGTGGGGTAGTCATGGTGACGCTGGTGTACTTCGCAGTCCGTTGGTTTTAACTAATGCCGCGAACATGCTTGTCTGGCACCCTGATCCCCTGACGCATGTGTTCAGAGAAATGGGGGGAAAGTAGGGAGGTGGGAGAGAGAGACCCTAATTATATGAGTTACTGCTTATTCACTTTTGCCAAGTATGCTGTTTTAGTTTAGATACGGTAACAGTGGGGGATGTTGCAATAGCTACCTTTGTTAGTGCAGTTTCTACTTTCCTCATGCAGTCAGGCAGCATCCAAAATTAACACACACCACTTGTTAGAAATAATTGTGTTTGGTGAGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_01187688_01253805.mRNA True 2654 mRNA 0.51 20 1187579 1254010

Neighbor

gene id symbol gene type direction distance location
CI01000020_01147997_01150696 NA coding upstream 36616 1147545 ~ 1150963 (+)
CI01000020_01120223_01142481 UHRF1BP1L coding upstream 45006 1120223 ~ 1142573 (+)
CI01000020_01083614_01106789 PLXNC1 coding upstream 80322 1083230 ~ 1107257 (+)
CI01000020_00959078_00971223 CRADD coding upstream 215580 959078 ~ 971999 (+)
CI01000020_00949140_00951237 SOCS2 coding upstream 234794 948756 ~ 952785 (+)
CI01000020_01275836_01316392 ANKS1B coding downstream 21826 1275836 ~ 1316392 (+)
CI01000020_01341579_01343530 NA coding downstream 86883 1340893 ~ 1344046 (+)
CI01000020_01375811_01378288 AVPR2L coding downstream 119154 1373164 ~ 1379068 (+)
CI01000020_01383268_01384854 DNAJB9B coding downstream 129258 1383268 ~ 1386041 (+)
CI01000020_01395424_01397266 SPIC coding downstream 141116 1395126 ~ 1397343 (+)
G110743 NA non-coding upstream 118695 1057441 ~ 1068884 (+)
G110836 NA non-coding upstream 121414 1027444 ~ 1066165 (+)
G110738 NA non-coding upstream 210946 975669 ~ 976633 (+)
G110742 NA non-coding upstream 211996 974871 ~ 975583 (+)
G110822 NA non-coding upstream 217230 969393 ~ 970349 (+)
G110891 NA non-coding downstream 125668 1379678 ~ 1379912 (+)
G110892 NA non-coding downstream 126202 1380212 ~ 1380452 (+)
G110908 NA non-coding downstream 133328 1387338 ~ 1387541 (+)
G110909 NA non-coding downstream 133599 1387609 ~ 1387903 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 371069 810899 ~ 816510 (+)
G110589 NA other upstream 960731 180778 ~ 226848 (+)
G110562 NA other upstream 1139539 30693 ~ 48040 (+)
CI01000020_02444149_02444833 NA other downstream 1190234 2443278 ~ 2444944 (+)
G111183 NA other downstream 1393501 2647511 ~ 2658913 (+)
G112679 NA other downstream 2047161 3301171 ~ 3303730 (+)
G112753 NA other downstream 2460371 3714381 ~ 3733586 (+)

Expression


Co-expression Network