CI01000020_01395424_01397266 (SPIC)


Basic Information

Item Value
gene id CI01000020_01395424_01397266
gene name SPIC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1395126 ~ 1397343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_01395424_01397266.mRNA
ATATAAATGCATGAAAGGAACATAAAAATCAATTTTTCTGTCTTGCGAGTTTTTTTGAAGTGTCCCACCTCAGGCATAATTTCCCAGCATTCCCCAGCTTTTCTCTTGCTGTGATTATCAGAGCAGTTATTGTTTGGTGCCTCTCAATACTTTTTTACAGGACCAATAAACTACAGTGCCGTTGACAGCTTCTAACCTGAAATGCAAATGTTTTCACAAAGGAGAAGGAATCCTGGATAAACTAGTGGTTAGTCCCTCTTTCTTTCTCTCTCTCTCTCTTGCTCTCTATCTTTTTTTCATGGATGGAGATATGGAGATTAAAGAATCGAGCGACTATGAGTCCTATGTGGTCTTCATTTCCAAAAAGAGAAAAAACAAAAACTATGAGAATTTGGAAAGTCAACAGTCTTCTGTGAGACATGCCATCTCATACTATCAGTTCACACCTCATTTTGAGCCTCCAGGATCAATGTATGACTGGAATGAATCCTCATCATGGTCTCACATTGTGCCAGATGTATCTCTGGGGCCATTGTGTTCTGCTGAGCCTTCGGTATTTTACTCAAATTTACCACAGCGCCACGGAAAAGGTCGTAAGAAGTTACGGTTATATGAATATCTGCACGAGGCCCTTCACGACGACAACATGGGCGACTCCATCCAGTGGACGGACCGAGGTAGCGGCATCTTCCATTTCATCTCGAAAAATAAAGAGAAACTGGCCGAGTGCTGGGGTCAAAGAAAGGGCAACCGCAAGACCATGACCTACCAGAAAATGGCACGCGCTCTCCGCAACTACAGCCGCACGGGCGAGATTGTGAAGGTGCGTCGCAAGCTCACCTATCAGTTTAATCCAGCTATACTGCAGCGACTGAGCTCACTGTCAGGCTACAGCTCAGGCCCTTCGTCCAGAGACATGGCCCTTCATCAACAAGGCTCTTCTGAGCATGTGTACTACAGCTCTCCTCTCCCAGACTGTCATTACTGGTACGGCCAATACTCTTACCAGGGCGAGTATGATCTTGCTACTGTACTGACAGTGCATGAGGATCCCAAAATAGGCATTTGATTCTCAAAATAGCCAAATCCTAAATTCCATAAATTTTACCCTCTCCCTGTCTTTTACAAGATTGGAGATGCTTTGAA

Function

symbol description
spic Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SPIC (Spi-C transcription factor).

NR:

description
Spi-C transcription factor, partial

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09440 SPIC; transcription factor Spi-C

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_01395424_01397266.mRNA True 1146 mRNA 0.44 4 1395126 1397343

Neighbor

gene id symbol gene type direction distance location
CI01000020_01383268_01384854 DNAJB9B coding upstream 9085 1383268 ~ 1386041 (+)
CI01000020_01375811_01378288 AVPR2L coding upstream 16058 1373164 ~ 1379068 (+)
CI01000020_01341579_01343530 NA coding upstream 51080 1340893 ~ 1344046 (+)
CI01000020_01275836_01316392 ANKS1B coding upstream 78734 1275836 ~ 1316392 (+)
CI01000020_01187688_01253805 NA coding upstream 141116 1187579 ~ 1254010 (+)
CI01000020_01400705_01401757 NA coding downstream 953 1398296 ~ 1402082 (+)
CI01000020_01416902_01441420 MYBPC1 coding downstream 19559 1416902 ~ 1441556 (+)
CI01000020_01447228_01456657 CHPT1 coding downstream 49061 1446404 ~ 1457595 (+)
CI01000020_01484806_01488530 NA coding downstream 87273 1484616 ~ 1489015 (+)
CI01000020_01500660_01504462 KLHL42 coding downstream 103317 1500660 ~ 1504827 (+)
G110909 NA non-coding upstream 7223 1387609 ~ 1387903 (+)
G110908 NA non-coding upstream 7585 1387338 ~ 1387541 (+)
G110892 NA non-coding upstream 14674 1380212 ~ 1380452 (+)
G110891 NA non-coding upstream 15214 1379678 ~ 1379912 (+)
G110897 NA non-coding downstream 70841 1468184 ~ 1476360 (+)
G110928 NA non-coding downstream 81751 1479094 ~ 1479329 (+)
G110940 NA non-coding downstream 117338 1514681 ~ 1516164 (+)
G110950 NA non-coding downstream 139610 1536953 ~ 1538262 (+)
G110952 NA non-coding downstream 145690 1543033 ~ 1543255 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 308353 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 578616 810899 ~ 816510 (+)
G110589 NA other upstream 1168278 180778 ~ 226848 (+)
G110562 NA other upstream 1347086 30693 ~ 48040 (+)
CI01000020_02444149_02444833 NA other downstream 1046901 2443278 ~ 2444944 (+)
G111183 NA other downstream 1250168 2647511 ~ 2658913 (+)
G112679 NA other downstream 1903828 3301171 ~ 3303730 (+)
G112753 NA other downstream 2317038 3714381 ~ 3733586 (+)
G113050 NA other downstream 3029315 4426658 ~ 4439762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028704 spic coding NC_007115.7 CM002888.2 17807837 ~ 17812131 (-)
bowfin (Amia calva) AMCG00012692 NA coding CM030125.1 CM030125.1 4840227 ~ 4846796 (-)