CI01000020_01400705_01401757


Basic Information

Item Value
gene id CI01000020_01400705_01401757
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1398296 ~ 1402082 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_01400705_01401757.mRNA
CTATAAAAGTATATCTTCATATTTATATCTGCTTTTTTCAACTTGTTTACATAAGATCATTTGTTTTTGTGTTCAAATAAAGTTTCCTGTCTTGAAAATCCCAATTAATTTGTTTGTTGTAAAAGATGTACACTTGAAGCCCGCTGTATAAACGTCTGCGCTGATTTCTTTGCAAATGCGTTGGGCCAAGCTTATCTAATTTCACAGAGAGAAGATTGTTTGTGCCTGCTTTGTGTGTCATATTACAAACTGATTTTAAATCACCTTCCTCTTTGTAAGATAGCAATCAAACACTAATGTAGTGCTGCTGTATAATTTTCATAAAGAACAATAAACATTTGTCTCATAACAATTGCACCTTTTCAGACTTTATGATTGAAGTTTTAACCATTGCATTTCTCTCATCTATGTTGCTTTCATATTTTGTTCATGATTTCAAAGTTCTCGATCATTTCAGCACAATTGACCATGTTTTTTATGTGGAGCCTGCGTGTCATTGTTAGGTGGTTGTGGTTGTTATCTCTAAGAGTGAAGAGGATGTGGTTACTGGTTCCATAAAGGTGGATGCTAGAGATGTGTGTTAGACCGAGATCAGGGTGTGTGTGTGCGTGTGTATTTGGGCCGAAAGAAACTGTGGTTTTGGGTCAAAAGATGGCTGGTTATTTATGTACGGTCGTAGATCATTCCAGAAAGGCTTGTTCACTCCCCCAGCCCCCTTGTTACTGATAAAAACGATTCTGCACCATTTCAACGGGAGTTTTGTTTGTAAAGCACACTAATAGTAACAAATTTGTCTCTCTTTTTTTTTAACTTATTGGTTATTCATTAATACAACAAAACCTGAAACAGCAATACATTCAATAAGGATCACATCCGTAACACTAACATGGTAAGAACTAATACGTTTTACAGTTTTGTTGTATAGTTTTTATTCTACGGTGGAGCCAAACATTATTTGGACAATTTTAAATGTATCAATGTCATTATATATATTTTATCTAACCAAAAATACTTTTTCGGGGGCCCACTGTTGTGTATGAGATGAAAATCTATATTTCTTACCAGAACAGTGTGCAGGAATATCAAACTGATTTGGAGGTGATTCTGGGATTTCTTGAGGAGCACTACAGACAGGAATCTCGAAGTAAAGCCCTATGGAACAGTAAGAAAGATGCTTGAAAGTACTAGAGTTCACCCAAAAATGAAAAATCTGTCATCATTTACTCACCCTTATGTCTTTCCAAGCCTGTATGACTTTCCTTCTTCGGCGGAACACAAATGAAGTTTTAATTTTTTTTCGTCCATACAATGAAAGTCAACCATTGTTAAAAAGCACTTAATCGTTTTGAATGTGCACTTAGTGTAGTGCACTTTAAATTTAAAAAGTATTTAAAAAAAACAACAACTGTATACTTGCAGATAATGCAATTTTAATTAAATAAATGGCCACTTAAGTGTACTTAACACTATGTTTCTTAACACTCTAAAAAGTGCACTTTTAATAATCGGGGTTATTATCATAAACTAAACCTAAAACTATTAAAAACATTTATTAAATCAAATCAAATATAAATATTAGTTGAAAAACTTAAACTAAACAAAAATTATAAATGTTGCCTTGGCAATAAACTGAAATAAGTAAGTTGAAGCACTAAAATTATTAAAACTAAAACTAAAACTAACTAAATCTAAAACTAATTCTGAAATAAAAATAAATTAAACCTAAATAAACACTAATAAAATGACAACAGCACATAACGAAAAAACTAAAAATTAACATAAATATTAACAAAAATCTAATTCTAAATATTAATACAAGTATTATAAAATTAAAATAAAACATAACACAACTGCTAATAGTCAAAGTTTTACTTTAAAGTACATTTTAAATAATTTTGTCTTGCTTACAAGAAGTACATTTAATCTGATACTAAAGCACAAGTACTTGATCATTACAAATGTGTAATTACAAACATATTTAAATACATGATATACAAGTTTGAATAGAAATGACATTAAAGTATCTTTTAGCTTACCATAAATGTTTACATTCCGTAGTACTTTTAAGAAACCATATTTTAATAGAAATAATATAAAGATGTACTTAAGTCCTGCTTAAATGTGTCAAAGGACTATAAGATTTAGCTAACTGCATTTAACACAAATGTAAACTCTAATACATTTTCATTCAATTGCAGTTAACATACAAACAAGCGTCTGAAAACATTACATTCAGATCGGACTTAAGTATTTCCTTTATATATTAAGGACATCCGTTTATTCTTAAGTACTCTTTTTCATAAGGTTATGGTGTCCAAAAAAATATTGGACCCCTCTGACTTGCATGGACGGACAAAAAAAAAAAAAAAAAAGTGTTTGTTTATCACCACTAACTCTTTTTGAAATGCAATGGCAGTGAGGGATCTCTGTGCCATGTCAGCTGGTGAAGTTGTGAACACTGCTGGAGAGAAGCTACCTAGTGAGGAGAATTTCAGCAATTTGTTAGAACAAGAAAAGTCCCAGCTGCAGTTTTCTGAGCAGGTCATGGGATCTCTGGCCAAAGCAAACAGATCTGACTCATATACGGACTGCGGGATGAATTGCAACGGCACCACTGCAGTTGATCAGTCTTCGGTCCTTGACAACTCACCCGACGGGCGATTGTTAAATGCCCTAAACGGACCAGAGAGACCATTAACTCCAAAAACAACACCTGAAAAGTGTGCCGAATCATTGCCCAGCATTACACCTGCAGAGAAAGGGAAAAAGCTACGCCTTTTCCACTTCCTGTTCGAGATGCTGGAGGACCCAGGCATGGCCCACTGCGTGTCCTGGGTGCCGGCTTCAGCCGGCGTCTTTCGCTTTTCTGCCAGTCACAAGGAGCATGTGGCAGAGCTATGGGGCCAGAGGAAGGGCAACAGAATGCCCATGACCTACCAGAAAATGTCCCGTGCCCTAAGAAATTACGCCCGCTCGGGGGAGATCATTAAAGTGAAAAAGAAACTGACTTACAAATTCAGTGTCGCTACTCTCTCTACTTTACAGAGTCAACATGGTATAAAGAAAGCACCATGTCAATCAAAATGAGAGCTGAATGATTGTCTCCAGTGTGTTACGGTTATTATATGTTACTCTCATGATATCTTAATTGCCTTGGTAACAGGAGGAGGTTAAAATTAGTTTCTATTTTTTTCTTGCTCAATTATGTTTCGTAAGAAGGTAATTAACTATGGTGTTTTGTATTACAGACTCTTAGTTAAATGACTTAGGCTACTTTTTGCTGTTCTTTGCCTATCTTGATGCATTTAAAAAGTATTTCTTTTATAAACATGTCTTTTTTATTACAATTTTCTTTTGATATTTATCCATTTTTATCAGCTTTTAAGCTGGCAGTTAAAAAGAACCAAAACAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_01400705_01401757.mRNA True 3412 mRNA 0.34 3 1398296 1402082

Neighbor

gene id symbol gene type direction distance location
CI01000020_01395424_01397266 SPIC coding upstream 953 1395126 ~ 1397343 (+)
CI01000020_01383268_01384854 DNAJB9B coding upstream 12255 1383268 ~ 1386041 (+)
CI01000020_01375811_01378288 AVPR2L coding upstream 19228 1373164 ~ 1379068 (+)
CI01000020_01341579_01343530 NA coding upstream 54250 1340893 ~ 1344046 (+)
CI01000020_01275836_01316392 ANKS1B coding upstream 81904 1275836 ~ 1316392 (+)
CI01000020_01416902_01441420 MYBPC1 coding downstream 14820 1416902 ~ 1441556 (+)
CI01000020_01447228_01456657 CHPT1 coding downstream 44322 1446404 ~ 1457595 (+)
CI01000020_01484806_01488530 NA coding downstream 82534 1484616 ~ 1489015 (+)
CI01000020_01500660_01504462 KLHL42 coding downstream 98578 1500660 ~ 1504827 (+)
CI01000020_01510968_01538886 NRIP2 coding downstream 107497 1509579 ~ 1539130 (+)
G110909 NA non-coding upstream 10393 1387609 ~ 1387903 (+)
G110908 NA non-coding upstream 10755 1387338 ~ 1387541 (+)
G110892 NA non-coding upstream 17844 1380212 ~ 1380452 (+)
G110891 NA non-coding upstream 18384 1379678 ~ 1379912 (+)
G110897 NA non-coding downstream 66102 1468184 ~ 1476360 (+)
G110928 NA non-coding downstream 77012 1479094 ~ 1479329 (+)
G110940 NA non-coding downstream 112599 1514681 ~ 1516164 (+)
G110950 NA non-coding downstream 134871 1536953 ~ 1538262 (+)
G110952 NA non-coding downstream 140951 1543033 ~ 1543255 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 311523 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 581786 810899 ~ 816510 (+)
G110589 NA other upstream 1171448 180778 ~ 226848 (+)
G110562 NA other upstream 1350256 30693 ~ 48040 (+)
CI01000020_02444149_02444833 NA other downstream 1042162 2443278 ~ 2444944 (+)
G111183 NA other downstream 1245429 2647511 ~ 2658913 (+)
G112679 NA other downstream 1899089 3301171 ~ 3303730 (+)
G112753 NA other downstream 2312299 3714381 ~ 3733586 (+)
G113050 NA other downstream 3024576 4426658 ~ 4439762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location