CI01000020_01585338_01604278


Basic Information

Item Value
gene id CI01000020_01585338_01604278
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1584864 ~ 1604586 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_01585338_01604278.mRNA
GGATAAAAGTGTGCTTGTGTGTTTGTACATATCAGCTTATGAAATATGACCAAAACAGAGTGATCATCTGGTCCCTGGCTCATCGCATCAATGATCGTCCATAAACATTGATTAAATCTTATGTAAGACATTTTGTAATAATTGGAAAATATGCAAGAAGTTTCCTTAAGAAAGAGACAGATGGCCCACAAGCCAAGGAAGGAGAAGAAAGGACCACTTTGCTTATTAGTGCATCAAGTAATTTGATCTTCCTTCTTCCACCTACTTGTTTTTGACAAGCTTCACATTTCCTGTGTCCCTGGACTAGTGGAGTAGCATTTCCTGTCTGGCCTCAGTCTGTGTGATGCAATGGTAAACAGCCTCCCTCACAGGAAAAGCCCAAAGGACAGGGGCTCTGCTGCGCCCCTGAGACACTGAGGCAATGGAAAGCCCATCTGCCTGGAATTGGCCTAATCTCATCTGGTGAATTGGACGATGGGATACAGAAAACACCAATCACGCCTGTCCAATTTCATTACAGATCTCAATGATGAGAAGTTCAGAGAGGAGATCAGAATGGTCCCACTCATCACCCACAGGTGGGCTGGTGGCCTCAGATTGCACAATTCCCTGCCCCAGTATGCGACCACTGTGAAAGAGGGGAAAAACCACCAGGCTGCCAGGCTGAAGCTGACTCAGAAGCTCTGGCATCTGCCACAGGACAGGGATAGACAGAGGGATGGTGAGACGTCTATGGTGATGGATGAGTCTCTGCTGGAGCCCTGGGCCACAGTGTGTCATGGATTCAGCCAGTATGCCATTAGCACTAGGTTCTTCAGCTCCAACCACATGATCAAAATCACCGGAATAAAAACTTGCCACACCCGTCACACCCTCATTAAGCACCCTTCAAAAGCACACAGCAAACACTCACCTGTTGTCCGGTCTCGTCAGTCTCTGTATGAGAATGTACCTACTCGACTGCCTACCTGTGATCTCTCACCTTCATCTGTCAATCCTTCAGACTGTTCATCATCTACACAGTTCCACCAGCCGCGCCAAGCAAACCTGTGCAGGTTGGCTCATTTCACCTCACCCAAACTGAGCGCCAACAACGAATTCACAATAATCTATCTCATACCAGATTGCCCAGTTTGTCCTCGACCAGCGGCACCATCATATTACTTCTGCTTTGTGAGACAAGCCATCCTGTGGAACAGAGGACAGCATCACACAGTACAAAACAAAGTACGACTTCTGCCTATATCCTTTATGAACATTCACGATTGCTTGCTCTGTATTCTGCGGGATGGGGAAAGCAGTTTTGGACAGGCCAAAAAGTTTAAAAGAGAAGACAGAGGCACAGAGACACACTTCTGTTTGGCCCCCAATCGCCTCGCCTCCCCCCGGCGGAGGGTTCACACAGAGGCAGTGCTATTAAGCGACTCTGAAGAGCCCACACACTGGGGCAGAGGACCCTCAGGCCCGACATGGGGCTACAAACACCATTACAAGGTTATCAAGCGTGAGAATGGCCCTCCACCCTTGTGTTCTCGCTTTCATGCTCATATGGAGGCCTGTCCTGTCCGTTTTAGAAGTCCACATTTCCTAAACGTGCACTCCAGAACAGGGCCTAATCGTCTGGGGCAAAAACAACAGCAGCAGAGCCTGAGTGCTCCACAACCTCAAATATGGCCAGGCATCAGGAGGCACCGAAACATAGATAATTCCAGTAGTAACCAATTCAGTGTGTTTCTGCCCCATGCACCTGGATCCCCTACTTCTCCAGCACCCCCAGCAAGTCCTTCTTTGACTCTCAAGTTTGCTGATAACCCTCAGAGATCCCAAATCCTGAATACACACTTCCAGCTGACAGATAAAGAAGAAGATGCATCCACTGCTCCACAAGATCTGAATCAAGGACACCATGAAATGGCTGAAGAAGAGACAATGACACCAACGACTCCAATGTCCACCCCGACAACCCCAAGCATACCAGCCACCCCAACCACTCCAGGCACCCAAACAACCCCAAGTACCCCAATCACTCCAGGCACCCCAACATCTTCTGTGACCCCAAATTCTCTTTCTGATTTCAGCCGCCCTTCGTCAAGCCAGTTTAGCCGTAGCACAGACCTGAACAGTAGCTTCTCAGACGCCCTGTCAGTGAACTTCAGTGTTGACCATGATGCTGATAATAGTACCGATGACGAAGACAATCATGCTTATGACCTCAACCAGAATAATGATTATCAAGAGGGCTGCTCTACTTCTCTCCCCGAGCTTCACTTCAGCTCTGCAGGAAGTTGCAGTCAGGCCAGCTCACGAAAGGAAGTCCTTCAAGCACATCTCTCTAGATCTCTTACATCCTGCAAACAAGAAACACCTTCCACTTGCTTGCCAGACACTCCACTTTACATCTCTAAAACTCCTCAATCACGGCAAACCTCAGCCGTCCAATGGTCCACATATGAAAACCTGCATGGACGCCTCGGATCAAGCCAGTCTGGCCTGAGCATTCAGTCACAAAAGCCTGATTGCTCAGCAGTGGATAGTCGGTCAGAATGGAACCTTTGGCCCGTGCTTCCTCCCATCATGCCTCAAGAAGATGAACTGCAAGAGGGAAAGCGAGGGGGTTCTTTTGATAGGGAATCAGGCTGGTACCGTTTGATTCCCCAGTTCAAAGCGGCCAAGGCCTTTACAATGGGGGACGAGGGGGGTGGTGGTGATGCCGGCTGCGACGTGTTCTTCCCTCTTAGCCTCAGCCTCCCGCGTTCCCTTCTTTCTTCCTCTTTTCTCTCTCTATTCTCTCCGCTCCCTGAAAGGCAGACGTGTGGAGCGGCGGTCATAAATCCAAGCTGACCGCCGCCTCTCTGACGGGTGAACAGTGAGTGAGCCTCAGCTACAATGCGTATCTCTTAGATGCCCTCCATGCGCTAATTTACCGTCCAGTCAGGAAAAAGAGCCAAGGCCACTGACATCTGACTCAAACTGAGAGTTCATGAAAGAAAGCAAACAAATCAGAATTTGCAGATAGATTTCTTCGTCTTTTCTCTCTTTTTTTGTCAAAGGAATGATAAAGTGACTATATGTGCCTTGTTTACTCATTCATGAGGCCAGACAGATAAATATATCACTGATGTGATAGTGAAGCTGGGGTTTAGTGGGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107593478

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_01585338_01604278.mRNA True 3149 mRNA 0.49 13 1584864 1604586

Neighbor

gene id symbol gene type direction distance location
CI01000020_01510968_01538886 NRIP2 coding upstream 45734 1509579 ~ 1539130 (+)
CI01000020_01500660_01504462 KLHL42 coding upstream 80037 1500660 ~ 1504827 (+)
CI01000020_01484806_01488530 NA coding upstream 95849 1484616 ~ 1489015 (+)
CI01000020_01447228_01456657 CHPT1 coding upstream 127269 1446404 ~ 1457595 (+)
CI01000020_01416902_01441420 MYBPC1 coding upstream 143308 1416902 ~ 1441556 (+)
CI01000020_01608261_01638242 NA coding downstream 3251 1607837 ~ 1638943 (+)
CI01000020_01647763_01658875 PAH coding downstream 42638 1647224 ~ 1659574 (+)
CI01000020_01660231_01665929 PAH, TH2 coding downstream 55445 1660031 ~ 1666074 (+)
CI01000020_01684414_01696762 PARPBP coding downstream 79828 1684414 ~ 1697096 (+)
CI01000020_01745382_01768397 LRMP coding downstream 140170 1744756 ~ 1769019 (+)
G110962 NA non-coding upstream 8717 1575872 ~ 1576147 (+)
G110954 NA non-coding upstream 39517 1545132 ~ 1545347 (+)
G110952 NA non-coding upstream 41609 1543033 ~ 1543255 (+)
G110950 NA non-coding upstream 46602 1536953 ~ 1538262 (+)
G110940 NA non-coding upstream 68700 1514681 ~ 1516164 (+)
G110989 NA non-coding downstream 64854 1669440 ~ 1669856 (+)
G110967 NA non-coding downstream 110909 1715495 ~ 1725122 (+)
G111028 NA non-coding downstream 171408 1775994 ~ 1776484 (+)
G111084 NA non-coding downstream 420084 2024670 ~ 2024915 (+)
G111044 NA non-coding downstream 459468 2064054 ~ 2070761 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 206515 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 498091 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 768354 810899 ~ 816510 (+)
G110589 NA other upstream 1358016 180778 ~ 226848 (+)
G110562 NA other upstream 1536824 30693 ~ 48040 (+)
CI01000020_02444149_02444833 NA other downstream 839658 2443278 ~ 2444944 (+)
G111183 NA other downstream 1042925 2647511 ~ 2658913 (+)
G112679 NA other downstream 1696585 3301171 ~ 3303730 (+)
G112753 NA other downstream 2109795 3714381 ~ 3733586 (+)
G113050 NA other downstream 2822072 4426658 ~ 4439762 (+)

Expression


Co-expression Network