CI01000020_01608261_01638242


Basic Information

Item Value
gene id CI01000020_01608261_01638242
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1607837 ~ 1638943 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_01608261_01638242.mRNA
ATATAAAAACCTAAAAGTTGTGTACACAAACAACTTGTAGCTTTTAAATGTACCAAGTTATTACGAGGCAATCGTTGTCTCTTCAGGGTGTTAAAAGACGTTTAACACCCTGTTAGCATTATGTGTGTATCTGTTTACCACAGAAGCTATGGGCCAAAAGTCATTCCCAGGAATTGAGACATTGCTGCAGGGGAGGGTGTGATGCTGGTGGTTGTTTCGCTCTTGGAGGTCCTTGCTGACAATATACTTTCAGCCCGGGGCAATAATAAAACTGTAAGCTGGTATGACAGCTGAGGAAATAGGTTAAAACGTCCATTGCGATAAAATGCAAATTCCTGAAAAGAGTGCATAGAGTACATAAATGTTTACACAGTATATTGCGTTTGTATTTACACATAATTGGGCCATTTCAGGTCAGTGTATAATGGAAGGGACCCCTGACTCCCAGTCCAACAGGTCCCAGTCTGATATCTTTGCTGAGCTGGATGATCTGGCCCCTCACTCAAGTTCCTGTGTGTCCCCAGACCACCCAGCCGGGAGTCAAACTGACCGATCCTCACCTACCACAGATCTGAGCCCTGGGCTTGCGGCACTGACTGTGGGATGTGATTCGGGTGATCTAGGATCTTTGTCCCGCGTGCAGCTTTTGCTATTGGACCGAAAAGGATCCGAAAGCCCTGGTTCCATCCCAAGCCCTGAATGGTGTATCACTCCAGACGGGGAGGAGTATGAACCTGGCCTTAGAGTCTGGAGCTCGGGCATTCCCCAATATTATCAGTCCACAGTCCTGGACAACCGCAAACCATTAAGTGGCAGAAACAGTGGCCAAGATTCTTTGGCAACTTTCAAGGGACGCAAAAAGTGCCCTGGGGTGAGTACCTTGCTCATAAAACCATTTCAACACACACATAGAGGAATCTACAAGCGACTTTATGGCTCTCGTTTCTATATGGAGGCGACTGGGGGATTTCTGCTTGCTGCTGGGCGGCAGCTCATCAGTGTGGAGAGTGGATCAAGGACATCATCCTCTTGTTCTGTCAGCTCAAGAGTGTCTGAGAGCAGCTCTAAGAACCAAAAGAAACCCACCTGTGAGGACCAAGGTTGCGAGTTGCAAGATGAAGATGTCCCGCTCTATTTGTCGCCACTCTCTCCCAGTGCTTTGCAGACAGCTGCGCTTTCGAGTGCCGTTCTGCCGATCTACGCCGATGGTCCCAATTTGCCGGCCCTTTTCATGATTGGATATGCGGTTTGGAGTGCTGAGGAGAGAGAGGTTGATTTTCTGGCAAAGTACTGCATCCTCAGTAAGGAGAAGCTATTAGTGTACAAAAGAGCATTTGAGGCTGCTGATAGTGATGGAGATGGTTATCTGAGCTGTCTGCAAGTGCTGTTGGCCCTAAAAGAGATCATTCCCCCAGAACTTCTGACTGAAGAAGAGGAAATATATGTGTACAGGATTCTGGAGCTGGTTGATTTCAGAGTGACAGAAGGCCTTACGGACCTGCGCCTGTTTGCTGTAGTGGCCAGTCTGGCCCAGAAAATAGCCACATTAGACAAGATGGATTTCAGATCTCTGGAGATGAAGCTTTATAAAGCCAAGCAGTTGTTCCTGTTCTTGCTGGAGGCCCAGACAGGGGGCGCTGTGGCACCAGAGGGCTGCATTGAGGCAGAGCAACTCCTAGTGGAGCTCAAGGCAGGGGGCATCAGGCCAGAGCACGAGGCGTCGGTAAGACGAGAACTTCGCAATCTGCGCTCCCTCGACCTTCTCGACTTCCTTGCTCACCTGCCTCTCTTCATCCTCATCCATAACTCGGTAATCGCCAACCCCTTCGATGACTCCAGCAACCTGTGATGGTATTAACAAGAACTGTTTGCACCAATGGTTATGTCATATTAATTCCAGTGCAAAACATAAACAAATAAACACATATATTGGAGATATATGTATAATAATACACATATCTGAAAAACGTTCAGGGTCGGTAAGATTTTTGGATGTTTTTGAAAGACGTTCTTATGCTCAACACAGCTGCATTTACTTGATAAAAATACAGTAAAAACTGTGAAATAGTGAAAGTGTTTCTATTTAAATATATTTTAAAATGTAATTTATTCCTGTGATTGCAAAGATGTATTTCCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCTTTTAGAAATCATTCTAATATGATGATGTGCTGCTCAAGAAACATTTCTTATAATTATCAATGTTGAAAACAGGTGTGCTGCTTAAAACATTTTTTTCAGGATTCTTTGATGAATAGAAATTTCAAAAGAACAGCATTTATTTGAAATAGAAATCTTTTGGATTATAAATGCTTGTCATTTTACACTTCATTTATCACTTTATTTTATACTTTAAAAAAAGAAATCTTACTGACCCCAAACTTTTCAGCAGTAGTGTATATAAGAATAAAATAGAATTAAAATATTTATATAAATTATATTTTTTGCATAGATAATACATATTACTTTACATTTCATATATTATATTATATATTGATATCAGCACTAAGTACAGAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_01608261_01638242.mRNA True 2550 mRNA 0.43 11 1607837 1638943

Neighbor

gene id symbol gene type direction distance location
CI01000020_01585338_01604278 NA coding upstream 3251 1584864 ~ 1604586 (+)
CI01000020_01510968_01538886 NRIP2 coding upstream 68707 1509579 ~ 1539130 (+)
CI01000020_01500660_01504462 KLHL42 coding upstream 103010 1500660 ~ 1504827 (+)
CI01000020_01484806_01488530 NA coding upstream 118822 1484616 ~ 1489015 (+)
CI01000020_01447228_01456657 CHPT1 coding upstream 150242 1446404 ~ 1457595 (+)
CI01000020_01647763_01658875 PAH coding downstream 8281 1647224 ~ 1659574 (+)
CI01000020_01660231_01665929 PAH, TH2 coding downstream 21088 1660031 ~ 1666074 (+)
CI01000020_01684414_01696762 PARPBP coding downstream 45471 1684414 ~ 1697096 (+)
CI01000020_01745382_01768397 LRMP coding downstream 105813 1744756 ~ 1769019 (+)
CI01000020_01797763_01808798 NA coding downstream 158555 1797498 ~ 1808924 (+)
G110962 NA non-coding upstream 31690 1575872 ~ 1576147 (+)
G110954 NA non-coding upstream 62490 1545132 ~ 1545347 (+)
G110952 NA non-coding upstream 64582 1543033 ~ 1543255 (+)
G110950 NA non-coding upstream 69575 1536953 ~ 1538262 (+)
G110940 NA non-coding upstream 91673 1514681 ~ 1516164 (+)
G110989 NA non-coding downstream 30497 1669440 ~ 1669856 (+)
G110967 NA non-coding downstream 76552 1715495 ~ 1725122 (+)
G111028 NA non-coding downstream 137051 1775994 ~ 1776484 (+)
G111084 NA non-coding downstream 385727 2024670 ~ 2024915 (+)
G111044 NA non-coding downstream 425111 2064054 ~ 2070761 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 229488 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 521064 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 791327 810899 ~ 816510 (+)
G110589 NA other upstream 1380989 180778 ~ 226848 (+)
G110562 NA other upstream 1559797 30693 ~ 48040 (+)
CI01000020_02444149_02444833 NA other downstream 805301 2443278 ~ 2444944 (+)
G111183 NA other downstream 1008568 2647511 ~ 2658913 (+)
G112679 NA other downstream 1662228 3301171 ~ 3303730 (+)
G112753 NA other downstream 2075438 3714381 ~ 3733586 (+)
G113050 NA other downstream 2787715 4426658 ~ 4439762 (+)

Expression


Co-expression Network