XLOC_008148


Basic Information

Item Value
gene id XLOC_008148
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 48665871 ~ 48708073 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016487
AAAACAGTCAGATTTAATTAACGTCAGAGACGTGCAAGATTTACCGAAatacacagagacagaaacacaaGCAAAGATAAACTCTCAGAGTTTTACAAGATTGGGAATTTGATGGAATGTTTGCCACATTCGCAAATAATCATCTCCTGAGTCACCGTTTTCAACACGGCTTGGATCTACAAACATGTGAAGACTGTTTGAGTGTCATCAATTCTTGATGACTGTGTGGCTGTCATTGATGTGAGACGAGTGGATTGAAATGTTCTGCGAGGTGCCGAATCGCTCTTACCTGCTGTCATCACACACCTAGGCATACCTTACCTGTTGCTATGGAGACGCCTGAGGAAAGAAAGGAAGATTCAAGGACAGggaacctatgatgaaaatcaacattTGTAAGCtgctt
>TCONS_00016486
AAAACAGTCAGATTTAATTAACGTCAGAGACGTGCAAGATTTACCGAAatacacagagacagaaacacaaGCAAAGATAAACTCTCAGAGTTTTACAAGATTGGGAATTTGATGGAATGTTTGCCACATTCGCAAATAATCATCTCCTGAGTCACCGTTTTCAACACGGCTTGGATCTACAAACAggaacctatgatgaaaatcaacattTGTAAGCtgctt
>TCONS_00015900
CGACAGGTGCGTTGCAAGGGAAAACAGTCAGATTTAATTAACGTCAGAGACGTGCAAGATTTACCGAAatacacagagacagaaacacaaGCAAAGATAAACTCTCAGAGTTTTACAAGATTGGGAATTTGATGGAATGTTTGCCACATTCGCAAATAATCATCTCCTGAGTCACCGTTTTCAACACGGCTTGGATCTACAAACATGTGAAGACTGTTTGAGTGTCATCAATTCTTGATGACTGTGTGGCTGTCATTGATGTGAGACGAGTGGATTGAAATGTTCTGCGAGGTGCCGAATCGCTCTTACCTGCTGTCATCACACACCTAGGCATACCTTACCTGTTGCTATGGAGACGCCTGAGGAAAGAAAGGAAGATTCAAGGACAGCACAGCTCGGCGGGAACAAACAGCCGTGCTCGCCAACACTCGACCACACGTTGCTCAGCAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117676

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016487 False 406 lncRNA 0.42 4 48665871 48708053
TCONS_00016486 False 222 lncRNA 0.37 3 48665871 48708053
TCONS_00015900 True 451 lncRNA 0.46 4 48673253 48708073

Neighbor

gene id symbol gene type direction distance location
XLOC_008147 si:ch211-154c21.1 coding downstream 77449 48580369 ~ 48588422 (-)
XLOC_008146 CR376827.1 coding downstream 89171 48576584 ~ 48576700 (-)
XLOC_008145 CABZ01080059.1 coding downstream 316269 48349487 ~ 48349602 (-)
XLOC_008144 CABZ01080056.1 coding downstream 316898 48305439 ~ 48348973 (-)
XLOC_008143 rxfp1 coding downstream 405127 48107216 ~ 48260744 (-)
XLOC_008149 cnot6b coding upstream 26721 48734794 ~ 48765262 (-)
XLOC_008150 si:ch211-199b20.3 coding upstream 58923 48766996 ~ 48786708 (-)
XLOC_008151 NA coding upstream 129675 48837748 ~ 48843424 (-)
XLOC_008152 scocb coding upstream 224162 48932235 ~ 48939560 (-)
XLOC_008153 si:dkeyp-121d2.7 coding upstream 236247 48944320 ~ 48961056 (-)
XLOC_007641 CU855896.1 misc downstream 46258031 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 46258440 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 46258799 2406945 ~ 2407072 (-)
XLOC_008137 NA non-coding downstream 1990021 46629901 ~ 46675850 (-)
XLOC_008136 NA non-coding downstream 2132310 46530919 ~ 46533561 (-)
XLOC_008135 NA non-coding downstream 2163679 46501879 ~ 46502192 (-)
XLOC_008154 NA non-coding upstream 297246 49005319 ~ 49007824 (-)
XLOC_008155 NA non-coding upstream 325484 49033557 ~ 49035153 (-)
XLOC_008157 NA non-coding upstream 360787 49068860 ~ 49073654 (-)
XLOC_008160 NA non-coding upstream 501697 49209770 ~ 49214604 (-)

Expression


Co-expression Network