CI01000020_02514166_02557008


Basic Information

Item Value
gene id CI01000020_02514166_02557008
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2514105 ~ 2557539 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_02514166_02557008.mRNA
ATATAAAAGGCAGCAAATATTGTTTTTAGGGTACTAATGTTAACTTCCATTCCACTGTGGGATGGCTGTGGTTTTGGCCTTCACTCAACCAAGCCAGTCTAAAACCCACAGTCTGCATGGGCGAAATGCCACGGAAAAGTGTAAACACTTGTCCTACCATGTCATCATGATACTCTGTGGCAGTGCTGCTGGCGATGATGTCATTGGCTCTGTGGCCGCCAATATCTCAGTTTGCGGATTTCCCGAGGAGAAATCGCTAATGGCAGACACTTGGGTCGGGAACGGTTTTGTTCCGTTTGAGGAGATTATTCAAAGTCAGACTGGGCCATTGGCTCTTCCAGCACTCTGTGGCACCCACCTACTTTCCAACTCCACTTCAGTCAGCTGGGTCAGTCTGACTTTTTCTCCCCCAACTCAGATCTGGGACATGGAGCTTTTTGAAGGCTTGAAAAAGGTGTGTGACTGCTTTTCCCAGGGGTCCATATGCTGTCACGCTGTGAATAGTAAAAAGGATCTCCCTTTCACCTGTGGAAAATTGATACAATCCTGCTGTGAATTGCTCCATCCTTTTGGAAATTGCTCCAGACTATCAGAGATTTCTCTGAATGTAGAGGGAGCTTCATCAGCACTTTTCTACAGGAATGTTACATCAACATCGCCACGGCAACGGCTGGCTGAGCAGGACTCCTGTGAATTGAACACAGTGATGATGATATCAGGCACCCACTGTTCCCAGGAGTTTTATGCACCCTACCCGGCAAGCGAGATTTGCCACAGGGGAAGCACAGGATGGGAACACGTTCGCTACGGGACCCCGTGCGAGGGCCATTATTGCAGTACTTGTCATTTCGAGAGCAACAAGTCAGCATGTTGTGCCTATGATGAGTTACTCAGGGACTGGCTACTATATATGGTAGATGGAGCTGGTGAAGGGGACGGGCGGCCGTACCTGCTGGGCTGCGAGGGTCCTGCCGTGTGGGTCCACTGCATTCCAAACACCTGTGTCTCTGAAGATAAAATTCAGCAGAAACACTTACAACTTCAGGATGTGAAGGCTCACTGTATTACCCCGTTTCCTCTTCCTCTCTTCTCCCTCATGGCTCACATCAGGTATATAGTCCATGGGAAAAGGAAGAGAAGTTTCAGCAGTGACGCCTTTAAGTCTTATGACAACTTCATCGCCTGCCCTGAGGAATTTTTCCTGTCAAAAGTATTTTTGACCCAAGAATGCTTTGTTTCTCACTCTGAACTGCTTGTTAAGCAAACATTCTTATCTCAGATCTTGATAAGCAAGCAAGACCGCCACCAACTTCTCTCTTCTGACATCACAGTTGTAGGTAGTGAATGGCTGCACATATGCTGCCCTACAAAGGCAAAAGACCTCAACTCACTAGAGTGTGGAACTGAGAAAAATGCCAAATTTATTATAGGTAGGACACTGGAAATCTGGCAATTAGATGTTTTAGAAATGAAAATTATCTACATAAAAAATCTTGAGCTCAAACCAGACTTTTGACCACTATTTTGAAGTTACACTTTGCCTTCGTATTATCTGCAAAAAGTGTGAAGTCACACCAAAGCAAATGGAAGTAACTTCCACATTATCAATATTTGGTTGAACGCCATTTACAAAATCATTATAGTAACACCTGTATAAAATATAGTGATCGATGATTTACCATTGCTTTGTTACATGGAGCAGTTTGGTAGCTCATTCATTGGATAGCTGACTAGCCTATTTATGCTATAGGCTGCTAGCTAGCTAAATGAAATAGATTGCGATCTATCTAATTTGTTTGCCTAATGCATCTTTTGTGTTACACAATTTCTTACTTTGACCTTAATGTCTGTATTTCAAAGCCATCTCAATCATTATTTTCCTTCAAGAGCAGTGGGCCATCCTTAAACGCTGTTAGTAAAAACAACCACTTAACTATTTGCTTTACCTACACTTTTATTCAGGTATAGTGTGTGACAGAAGTGCTTCAGTGACAGATGTATGACACAGGCTACACCGTAATTTAAACACAGCAAACTTTAATGGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_02514166_02557008.mRNA True 2047 mRNA 0.44 10 2514105 2557539

Neighbor

gene id symbol gene type direction distance location
CI01000020_02444149_02444833 NA coding upstream 69161 2443278 ~ 2444944 (+)
CI01000020_02430803_02438850 NA coding upstream 74593 2430232 ~ 2439512 (+)
CI01000020_02416674_02427648 KERA coding upstream 86227 2413935 ~ 2427878 (+)
CI01000020_02411139_02412253 LUM coding upstream 100932 2410468 ~ 2413173 (+)
CI01000020_02386014_02399244 DCN, PGS2 coding upstream 114751 2385792 ~ 2399354 (+)
CI01000020_02569281_02578301 ATP2B3, ATP2B4, ATP2B1B coding downstream 11074 2568613 ~ 2578841 (+)
CI01000020_02627995_02631513 NA coding downstream 70456 2627995 ~ 2631870 (+)
CI01000020_02633932_02637797 MEST coding downstream 76393 2633932 ~ 2638006 (+)
CI01000020_02865197_02919405 CHCHD3, CHCHD3A coding downstream 307658 2865197 ~ 2919405 (+)
CI01000020_02983105_03176041 PLXNA4 coding downstream 425566 2983105 ~ 3176041 (+)
G111164 NA non-coding upstream 107642 2406231 ~ 2406463 (+)
G111160 NA non-coding upstream 137614 2375080 ~ 2376491 (+)
G111144 NA non-coding upstream 184599 2329285 ~ 2329506 (+)
G111141 NA non-coding upstream 188613 2325268 ~ 2325492 (+)
G111038 NA non-coding upstream 284544 2228630 ~ 2229561 (+)
G111212 NA non-coding downstream 63836 2621375 ~ 2621629 (+)
G111175 NA non-coding downstream 64814 2622353 ~ 2626680 (+)
G111216 NA non-coding downstream 89469 2647008 ~ 2647283 (+)
G111224 NA non-coding downstream 146541 2704080 ~ 2716598 (+)
G111225 NA non-coding downstream 148453 2705992 ~ 2746048 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 1135756 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 1427332 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 1697595 810899 ~ 816510 (+)
G110589 NA other upstream 2287257 180778 ~ 226848 (+)
G111183 NA other downstream 89972 2647511 ~ 2658913 (+)
G112679 NA other downstream 743632 3301171 ~ 3303730 (+)
G112753 NA other downstream 1156842 3714381 ~ 3733586 (+)
G113050 NA other downstream 1869119 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 2202473 4760012 ~ 4776083 (+)

Expression


Co-expression Network