CI01000020_02569281_02578301 (ATP2B3, ATP2B4, ATP2B1B)


Basic Information

Item Value
gene id CI01000020_02569281_02578301
gene name ATP2B3, ATP2B4, ATP2B1B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2568613 ~ 2578841 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_02569281_02578301.mRNA
CTATATAACTAAATGTCATTCTGGCAATTAAATCTCTACATTAACATTTAATATACTGCTTTCAGTTGTGCTCTATTCCTTCAGTTTCCAAATTTAAAGCATTTTCATGTTGCTTAAAAAAGCCATGTATAATGTTTGGGGGAAAAAGGCTTTTTTGTCTCTCACATAGTTAAGATGGCAGGTCAGTTCCCACGCTACTTCTCAAAAAAACCCACATAGTTCTGCCTGTAACAGTGGGTAGCATGTCACCTTGAAACTCAGCCAGTGAGTTTGTTCTTACTAATTCCAGGCCCGATGGAGAGTTTTCTAAATTGAAGGTGTTTGTTGATGTTTTGTGTTGAAATTAACGCACAGAATCTATTGTGTTTTGCATTTAGGAATATTAATATATAATAATTAATTTATAATCAAACATTCTTTTCTTTTTTTGCAGGTCCTTGGGCTGATTGTTTAAGGTTTTATTCACAATGAAAGCAACGCCACAGGCTGAGGGGAATGGCTTGTGAATTATCCCAGTCCTGCCACCTGCAGTCAGGCATCCTCCTCCTCCTCCTCTGAAGGACGTCAGTTGTTTATGGGAACTACTGGCATTGGTCTCCTGAGGATATAGCTCTCCTTTTGGGACGCCATTTTTCCACCCTTGCTGAGACGCGGTGTAGCCGGGAGACATGGCTAACAACTCATACAGCGGGGTGAAGAACTCTGTGGCCGAGCCCAATCACGATGGAGAGTTTGGCTGCTCGCTTAAAGAGCTGCGCTCTCTCATGGAACTGCGAGGGGCTGAAGGATTATACAAAATCCAGGAATCTTTTGCGGACGTTAATGGACTTTGCAGCAGACTGAAAACATCGCCCGTAGATGAAAATGTTGAAAATAGGGAATTATGGGTGCTTGCTGGGATGTTCTGTTTGGTGACAGTCCCAAGTTTCTATGATATTCTGAAACTCATTAAGTATCGTATGCTGCTATATAAGAAGGGCTGTGTTCTGTGTTTACTTGAATTACTAATTTTGTGTTTCTTTCTCACTCTTTTTCTTCCAGGATTAAGTGGGCAGCCCTTAGATATTGATAAAAGAAAAGAAGCATTTGGACAGAACTTTATACCTCCGAAAAAGCCAAAAACCTTTCTTCAGTTAGTATGGGAAGCATTACAAGACGTAACATTGATTATTTTGGAAGTGGCAGCAATAGTTTCTTTAGGCCTTTCTTTTTATAAACCTCCGGATTCAGAAAGTAAAAATTGCGGGAATGCAGCGGCTGGAGTAGAGGATGAAGGAGAATCTGAGGCTGGATGGATAGAAGGAGCAGCGATCCTCCTGTCTGTTATTTGCGTGGTGCTCGTAACAGCATTTAATGACTGGAGCAAGGAGAAACAGTTTCGTGGCTTACAGAGCCGCATAGAACAAGAGCAAAAGTTTACGGTGGTTCGGGGAGGGCAAGTCATTCCGATCCCTGTGGCCGAGATTGTCGTCGGGGACATTGCACAAATTAAATATGGTGACCTCCTGCCTGCTGATGGCGTTCTCATCCAGGGCAATGACCTCAAAATAGATGAGAGCTCCTTAACCGGAGAGTCTGACCATGTGAAGAAATCGTTGGAGAAAGATCCTTTGCTGCTGTCAGGTGGGACATGAAGATACAATCCACAGCGACTTCAACAGATCATTAGTGTTAATGCAAAACAAACTTTTTTTCTTTCTTTTTTTAGCATTTAGCATTAGAATTTTTATTATTTTCTGTTGAGTCCTGTCTCTGCTCTATCCAAAACTCAAGTCAAACCAAATTAATGACCAGCTTGGGAATTCAGATGTTGGCTATGTAGGACCTGCTCCCTCTCAGCAGGGCTATTGCACATCTTCAGCTAATCCCATTTTATGAAAGCTAGCTGATCCTCTGATAGAATGACATTGCTGTGTGCCATCCCAGAGGAGATGAAGGGGGATTTGTGAGCCTGAGTGGGCACTCCTCCAGCAGAGCTTGCGTTAGCATGCTGAGTCTACCCTAGCAGAAACCGCTCCCTGACATTTTTTTTTTTATAGACCCCCTCCTCAAGCCTAAATAATTGCAGAGGGCTGCATTCAAAGCCAAACTGGGGGGCAGAAAAATGGCCAGTCATTTCCATTTTTTTTAAAGCACAATGAGAAAATGCCATCGACTAGTGCTCATAGAGCCTA

Function

symbol description
atp2b4 Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Predicted to be integral component of plasma membrane. Is expressed in several structures, including blood; eye; gill; liver; and pleuroperitoneal region. Orthologous to human ATP2B4 (ATPase plasma membrane Ca2+ transporting 4).
atp2b1b Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Predicted to be integral component of plasma membrane. Is expressed in blood; eye; liver; and pleuroperitoneal region. Orthologous to human ATP2B1 (ATPase plasma membrane Ca2+ transporting 1).
atp2b3 Enables P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration. Involved in calcium ion export across plasma membrane and regulation of cytosolic calcium ion concentration. Located in plasma membrane. Is active in GABA-ergic synapse and glutamatergic synapse. Implicated in X-linked spinocerebellar ataxia 1.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_02569281_02578301.mRNA True 2174 mRNA 0.42 5 2568613 2578841

Neighbor

gene id symbol gene type direction distance location
CI01000020_02514166_02557008 NA coding upstream 11074 2514105 ~ 2557539 (+)
CI01000020_02444149_02444833 NA coding upstream 123669 2443278 ~ 2444944 (+)
CI01000020_02430803_02438850 NA coding upstream 129101 2430232 ~ 2439512 (+)
CI01000020_02416674_02427648 KERA coding upstream 140735 2413935 ~ 2427878 (+)
CI01000020_02411139_02412253 LUM coding upstream 155440 2410468 ~ 2413173 (+)
CI01000020_02627995_02631513 NA coding downstream 49154 2627995 ~ 2631870 (+)
CI01000020_02633932_02637797 MEST coding downstream 55091 2633932 ~ 2638006 (+)
CI01000020_02865197_02919405 CHCHD3, CHCHD3A coding downstream 286356 2865197 ~ 2919405 (+)
CI01000020_02983105_03176041 PLXNA4 coding downstream 404264 2983105 ~ 3176041 (+)
CI01000020_03189213_03235363 NA coding downstream 609264 3188105 ~ 3235432 (+)
G111185 NA non-coding upstream 47275 2520047 ~ 2521338 (+)
G111164 NA non-coding upstream 162150 2406231 ~ 2406463 (+)
G111160 NA non-coding upstream 192122 2375080 ~ 2376491 (+)
G111144 NA non-coding upstream 239107 2329285 ~ 2329506 (+)
G111141 NA non-coding upstream 243121 2325268 ~ 2325492 (+)
G111212 NA non-coding downstream 42534 2621375 ~ 2621629 (+)
G111175 NA non-coding downstream 43512 2622353 ~ 2626680 (+)
G111216 NA non-coding downstream 68167 2647008 ~ 2647283 (+)
G111224 NA non-coding downstream 125239 2704080 ~ 2716598 (+)
G111225 NA non-coding downstream 127151 2705992 ~ 2746048 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 1190264 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 1481840 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 1752103 810899 ~ 816510 (+)
G110589 NA other upstream 2341765 180778 ~ 226848 (+)
G111183 NA other downstream 68670 2647511 ~ 2658913 (+)
G112679 NA other downstream 722330 3301171 ~ 3303730 (+)
G112753 NA other downstream 1135540 3714381 ~ 3733586 (+)
G113050 NA other downstream 1847817 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 2181171 4760012 ~ 4776083 (+)

Expression


Co-expression Network