XLOC_008152 (scocb)


Basic Information

Item Value
gene id XLOC_008152
gene name scocb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 48932235 ~ 48939560 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00015903
gaGTTCGGATATGCTTGATTTAAAGGAAAGTACAGCGCTGGCCGAATTTCTTTCCGCGATCTGAAGGGTTAACACGTAATCCATGACGTCACTCTCCAGAAGGCATCGCTCCGGTGGCGCATCATCACTTCAGCCGGTCCAATTTCACATTTAAAAGTTTCCATCAGGCCTTGAGCTCATATTGAAGTGTCCATTAGAGCCGCAGCCCTGCATTTCACAACACAAGACGAGTCTTTCACCATGAACTCCGACATGGATGGTGACATAGAAAATCAAGTGGAGTTGGAGGAGAAGACCAGACTCATAAACCAGGTCCTCGAGTTGCAAAATACTCTCGAGGATCTCTCAGCTCGCGTGGATGCAGTAAAAGAAGAAAATCTGAAGCTGAAATCAGAGAATCAGGTTCTGGGGCAGTACATCGAGAACCTGATGTCAGCATCGAGTGTGTTTCAGACCACCGACTCCAAGAGCAAGCGGAAGTAAGAGAGTGTTTCTCTCTCCAGACCCCACAGTAGAACACAACCCTGCAGGTCAACCCTCATTAGCAGACCAGTTAATGCTTAttaaaggtctttgcacactcaAGTCCCAAATTTTCGTAAGCGTTCAAATCcccaaatattcaaagtttacCTCATTATGTCTGTGTCTCAGTTTGATATTTTGCAAGTGATAATGGaattgcatattaaaacgaagaCTACTGATATCTGTGAACCAATTGATCCTGAACAGAGGCATTTTTTCTATGGTACAGAGACGGAGACGGACACATCCAAACACGCACACACCAAACAGTGCCGACAAACTAGCATATCATAAATCACAGAAcatttctattctattatattagtTTCTTCAAAGCCATTTTGGATTTAGTTTTTTGCTTGTAAGGCGGCCCTGAATTGTCTAAACAcctctaaaaatgacttttcaaatgcaaaaaactaaaaaaaaaaaaaagaattaaattttATGATGAACGGCGATGTGTCAATACGATTGACACTACATGATGTCGAATGCAAAATTTATGGATGAAATTTTCAGATAACCTTAAGGCCTTTGCacacttttaatgcatttttaatgcatGTATATCTGAATAATTtggcacacacacaaaccttGAGTTTTAAATCAGAAACATTTAGCTGCAATGCTTTGTTTTATTCTCTCTtcttcaaaatagaaaaaaagaaagaggaaataCTGTGTTCACTGGATGGAGAGAGGAAGGATAGTTTACATCCTTATCAAACAGCTGCACTGGATTATCCCGAAATGCAGAGATTATTTGAGGAAATCACACAAGTACAGCTTTCTTTATGGGGATTTCCTACAGACATGATGTTTATACTGTTCAAACcatatacctgacaaaagtcttgtcgttgattccagttgtaagagcaacaaataataacttgacttctagttgatcatttggaaaagtggcagaaggtggatttttccgatgaatcatctgttgatctgcatcccaatcatcaccaatactgcagaagacctattagaacccgcatggacccaagattctcataaaaatcagtcaagtttggtgaaggagaaatcatggtttggggttacattcagtatgggggcgtgcgagagatctgcagagtggatggcaacatcaacagcctgaggtatcaagacattagtgctgcccattacattacaaaccacaggagagggcaaattctccagcaggatagcgctcctcatacttcagcctccacatcaaagctcctgaaagcaaagaaggtgctccaggattggccagccctgtccccagacatgaacattattgagcatgtctggggtaagatggaggaggcggtgttgaagatgaacacaaagaatcttgatgaactctgggagtcctgcaagaacgctttctttgccattccagatgactttattaatcagtgatttgagtcatgtcagagatgtatggatgcagtcctccaagctcatgatggagtcagacacaatattcattctgtctttatattctatactggacattacttCTGTTCAGTGAtcagacttttgtctaagcaaagtcaaacgttactgtcctaattaaaaaattaaaaagcaaggcatgatcatattttattctggtcaaataagcgtaatctagtggtctttgccttttatataagccacttctgataccaaacgatcaaccagaagtcaagttattatttgtttttccttaaaCTTCGAAATGCGAAAAGAGTTTTGCCAGATAGTGTATATTCTACACCCCTACCCCCAACACATTCTGCATTTTAACAATTTCAAAATGCTTATTTCTGAGATACTTTCCTTATGGAGACTagaaaaatgtccccacaaggtcacaATTTACTGGTATTTATTGGGGACATTTGGTACACAACTTAACacaagatacacacacatacatacgcacaaTCTTTGTTAGCCATAATATACTCTGTAATGCAAGTGACCACATTTTGGCTTTCgattgtacggtggctctgaactgtcaaaacacctctcaaactCTTTATTCAGATgtgaaaaactgaacattttttttacatgatcCAATTTTGTTTGTAATGACGGACGAAAGTTTGGAgacagtgtgcaataacctttacACTAAGATACATATTATCCCTGCGCCACTAAAATGGtaaatgtttacattaatttatcaGTATTTATGTCCTTTACATTTCGTTTTTTAACATCTATGTTGCTAAAGTTATTTTCTAAGATCAAGGTAAACTAAGAGTTTGTTTACGTTCAGACCGGTATATGATATTCCTTTTAATTTGTACCTCTTGAAATGGTTTTGTCTTGCTAAAACAAACAATGTAATATGTGTTTTCTATTTTGGGGTACAgttgtgtgtgaatgacagtagCTCTCTCCCACTGAGCTGTTTGTCTGTAATCAGCACTTCAGTTGAGAGGAGAAGAAACGAAAAACATTTCAGGGAAcgaatttaagacctttttctTGGTGCTATCAACAGAAGGGAGTTCTCTGGCATGCATCACATCTGTACCTGCATCAGTTTGTTGTGTTGGTGTGTGTAGATTCTTACCATTGTGTGGCATTGCAGATGcctgttttaattaaaacaaacatgattTGC

Function

symbol description
scocb Predicted to be involved in positive regulation of macroautophagy and regulation of protein complex stability. Predicted to be located in Golgi membrane and cytosol. Predicted to colocalize with trans-Golgi network. Orthologous to human SCOC (short coiled-coil protein).

GO:

id name namespace
GO:0016239 positive regulation of macroautophagy biological_process
GO:0061635 regulation of protein complex stability biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-41 Predicted to be involved in positive regulation of macroautophagy and regulation of protein complex stability. Predicted to be located in Golgi membrane and cytosol. Predicted to colocalize with trans-Golgi network. Orthologous to human SCOC (short coiled-coil protein).

Ensembl:

ensembl_id ENSDARG00000002217

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00015903 True 3160 mRNA 0.39 4 48932235 48939560

Neighbor

gene id symbol gene type direction distance location
XLOC_008151 NA coding downstream 88811 48837748 ~ 48843424 (-)
XLOC_008150 si:ch211-199b20.3 coding downstream 145527 48766996 ~ 48786708 (-)
XLOC_008149 cnot6b coding downstream 166973 48734794 ~ 48765262 (-)
XLOC_008148 NA coding downstream 224162 48665871 ~ 48708073 (-)
XLOC_008147 si:ch211-154c21.1 coding downstream 343813 48580369 ~ 48588422 (-)
XLOC_008153 si:dkeyp-121d2.7 coding upstream 4760 48944320 ~ 48961056 (-)
XLOC_008154 NA coding upstream 65759 49005319 ~ 49007824 (-)
XLOC_008155 NA coding upstream 93997 49033557 ~ 49035153 (-)
XLOC_008156 sept8b coding upstream 100630 49040190 ~ 49063157 (-)
XLOC_008157 NA coding upstream 129300 49068860 ~ 49073654 (-)
XLOC_007641 CU855896.1 misc downstream 46524395 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 46524804 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 46525163 2406945 ~ 2407072 (-)
XLOC_008146 CR376827.1 non-coding downstream 355535 48576584 ~ 48576700 (-)
XLOC_008145 CABZ01080059.1 non-coding downstream 582633 48349487 ~ 48349602 (-)
XLOC_008137 NA non-coding downstream 2256385 46629901 ~ 46675850 (-)
XLOC_008160 NA non-coding upstream 270210 49209770 ~ 49214604 (-)
XLOC_008162 NA non-coding upstream 396083 49335643 ~ 49336116 (-)

Expression

Expression of XLOC_008152(scocb) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.

Expression of XLOC_008152(scocb) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network