CI01000020_03189213_03235363


Basic Information

Item Value
gene id CI01000020_03189213_03235363
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3188105 ~ 3235432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_03189213_03235363.mRNA
ATATAAAAAGAAGCATAGAGGTTTGTGTTTTCACCCAAACAAGCAGCAAAGACCAGCTGGTGTGGTGGTTAATAGCAGGTCTTTGACAAACAAAGTTGCATTATAAGCATGGGTTCAAATCCCAGATGCAAGATTTTCTTATTACCATAGCCTAAGTTCATATACATTTACAAGTTCAAGCAAGTATATGGTTTCTTTTATATAAAACAAACCATAGAGGTTTGTGTGTTTCACCCAAACGTAAGCAACAAAGACCAGCTGGTGTGGTGGTTAACAGCAGGTCTTTGACAAACAAACCTGCAATGTAAGTATTGGTTCAAATCCCACAGATGCAAAGCTTTCTTTATAACGTAACCTAACTTCATACACATATACTTCTACAAGTACAAGCAAACACCCAGCAAATCAGTGGTGCAAAGGATAATTGTTTGCCTTACAACATTAAACAATTGGCTCGAACTCCAAAACATTTAAAGTATCTTTTATTTAAAACAAACCATAGAGGTTTGTGTTTTCACCCAAAATCGAGCAACAAAGACCAACTGGTGTGGTGGTTAACAGCAGGTCTTTGACAAATGAAAATGCAGCACAAGTGTGGGTTTGAATCCCAAATGCCTTGATTTCTTTTCAACCTAGACTAAATTCATACACATAGTTGTACAACTACAGGTCACTAACCAGCAAATCAGTGGCATGAAGGATAATCAATCACTTTCCAACATGAAATCGTTGGTTCAAATCCCACATCCTTTAGAGTTTCTTTTATATAAAACAAAGCATAAGAGGCATTGCTGACTTTACATTTTGTACACCTTTACATTAAGGGCCAGTTAGTGTGGTGGTTAATGGCAGGTCTTTGACATACAAAACCACAACACAAGTATTGGTTCAAATCCCACAGATGCAAAGCTTTCTTTATAACATAGCCTAAGTTCATACACATATATTTCTAAGTACAAACAAACACCCAGAAAATCAGTGGCGCAAAGTATAATTGTTTGTCTTTCAACATGAAAGTCCTGGTTCAAAACCTGCAACTTTTAAACTCATAATAAACATTGTATCCAACAAAGGACCCAAAAATACAATCCTCAATGTGAAAGCCATGATGGCACTGGTGGCTAAACACATGTTAGTTGCGGACAAGGCTGGGACAGAGGCATGGGTTCAAATCCCACCTCAACAAGTTGGGAAAATCCAACAGAAAGACTTGATTTCCCACAATCCTTTAGGCACATGGAGGAATGTTAGGAGACAGAATGGAATGGAGGAGTCCAAATGCCTGAGGAAGCGAGATAATTGTGTGTTGTACTTAACATCCACTGTAGTGGCCTGGGCAAACAGACCGAATCAAAATACTGACCGATCCAACATAGAGTTGAAAATAAGAGATGTGTTTGGACCGTTACACCCAGGGACGTGTGGACAAACATTGGCTGTAATGATGGACTTCTGCTCACGCACAGTGTACGTCAGGCAGCCATTTCTCAGAGAAAATAGCTACCGACTCCTGTTCTTGCCAATTAAATTCACCCTGGGGCCTTTCGGGTGTACGGCGCGTAATGCGGTAATCTTGACCAATCCTTTTGAGAAAGTGACAGAGTGGCGGTCACTTTGGGTCTTTTATCTAAGCTTTGATATTGGCTGGGGTCTTCATGTGCTATATGCGCCGGTGTCTATTGGTAGAGAGAAGGACTTGCTGCCAAAACAACCTTACGAAGACAAAAGTGTACAGGACAACATCCCCTCCCCTCCACCCACACCGATGACGGTCCCGTTCTACAGGGCAGATACTCAGAAACACAATGCGAACAACATCTAATCTCGTCAAATGCTGCCCAAAGCAATCAGAGCACAGATCTATTACACGCAAGAGATAAGGATTAAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_03189213_03235363.mRNA False 1891 mRNA 0.41 7 3188105 3235432

Neighbor

gene id symbol gene type direction distance location
CI01000020_02983105_03176041 PLXNA4 coding upstream 12064 2983105 ~ 3176041 (+)
CI01000020_02865197_02919405 CHCHD3, CHCHD3A coding upstream 268700 2865197 ~ 2919405 (+)
CI01000020_02633932_02637797 MEST coding upstream 550099 2633932 ~ 2638006 (+)
CI01000020_02627995_02631513 NA coding upstream 556235 2627995 ~ 2631870 (+)
CI01000020_02569281_02578301 ATP2B3, ATP2B4, ATP2B1B coding upstream 609264 2568613 ~ 2578841 (+)
CI01000020_03264878_03271412 NRF1 coding downstream 28685 3264117 ~ 3272069 (+)
CI01000020_03343617_03348546 KLHDC10 coding downstream 108185 3343617 ~ 3348555 (+)
CI01000020_03379393_03391963 SLC26A5 coding downstream 143961 3379393 ~ 3393102 (+)
CI01000020_03397866_03404516 PRDM4 coding downstream 162434 3397866 ~ 3404710 (+)
CI01000020_03405045_03408250 AKR1B1 coding downstream 169613 3405045 ~ 3408273 (+)
G111287 NA non-coding upstream 120295 3029927 ~ 3067810 (+)
G111288 NA non-coding upstream 173213 3003380 ~ 3014892 (+)
G111331 NA non-coding upstream 227038 2960859 ~ 2961067 (+)
G111326 NA non-coding upstream 250728 2937171 ~ 2937377 (+)
G111324 NA non-coding upstream 256415 2931301 ~ 2931690 (+)
G112699 NA non-coding downstream 27030 3262462 ~ 3262672 (+)
G112702 NA non-coding downstream 49269 3284701 ~ 3284907 (+)
G112687 NA non-coding downstream 68373 3303805 ~ 3304620 (+)
G112716 NA non-coding downstream 87391 3322823 ~ 3325360 (+)
G112681 NA non-coding downstream 102137 3337569 ~ 3338192 (+)
G111183 NA other upstream 529192 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 738298 2443278 ~ 2444944 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 1809756 1373164 ~ 1379068 (+)
CI01000020_01083614_01106789 PLXNC1 other upstream 2101332 1083230 ~ 1107257 (+)
CI01000020_00810993_00815495 CDPF1 other upstream 2371595 810899 ~ 816510 (+)
G112679 NA other downstream 65739 3301171 ~ 3303730 (+)
G112753 NA other downstream 478949 3714381 ~ 3733586 (+)
G113050 NA other downstream 1191226 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 1524580 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 1571595 4806765 ~ 4809414 (+)
G112659 NA non-coding downstream 10602 3209440 ~ 3209712 (+)

Expression


Co-expression Network