CI01000020_03335308_03338805 (ZC3HC1)


Basic Information

Item Value
gene id CI01000020_03335308_03338805
gene name ZC3HC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3334972 ~ 3339019 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_03335308_03338805.mRNA
ATCACCACATTTGAGAAAAAACAAAGTCATGGGTTACTACAATAAAACTATTATAATTTGGTGTTAGCAACCACTGTCATCAAAATAAGAAAATTAACAAAATGACAGAAAGATTCTCACCACTGTACATTTTTGTAATGGAGGGGGCGGAACTGTCTAAAAATGTTGATTATTGATATCTTGAAGGGGGAGGGTTTAGAGACAGACACCGAACATGGCGGCGCTCGGCAGCCGTGCAAATCGCTCAGAAAACGGCGAAAAACAAAGCAAATCTCCTCTCGTATCTCCTCTGAAAGTGCGAGAACTTCTGAACGAAGGGGTAGCCTCGGAAGACAACGTGTTTAATTGTTCGCAGCAGGATTCAAACACACTGTCTCCAAATGGCCTTGGGAAAGCTCCATGTGAGGCAGCAAACAAAGAAGCATTTTTCAACAGAATGAAGGACGGATTTCGGAGTTGCTACAGCAGCTTCAAACGCAACATGAGAAATTCTGTTCCTGGCCAGATTTTCCATGTCCAGACATTGCTAGTCAATAATGTTGTTTGCATTGCAGATCGCTTCTGGATGGTTCCTATTAATGAGCCTACGATATTACTCAGTGCCTTTGTAGACCGTTTTAAGAGTGCTTGCCTTCTAGAACAGCAGCTGCCTGCTATGAAGCCAGAGCAACTCAAAGCCATGACCTTAACTGAAGATGTTATAAGTGTCCTCCTGCAGCTGATTGAAGATGAGCAAGTGAAGCAAGGTGGTTCTCCCTCTAAGGTCTCATCAGATCCACTCTCTGTACAGGTGGCAGCATGCATTGTAGCCCTTTGTGGTTGGGCAGCCAGCCCGTCACTACACAATATGAATCTGCCCATCCTCACTTGTTCATACTGCATGAGAAAGGTAGGGATGTGGAACTTTTATCAAATGGAGACTGTTTCAGAGGGTGAAAACCCTCCACAGTCTCCAACATCCACTACCGCCTTGCCTCCAACTCAAGGCACAAGTGGGGAAAAGGGGACGCCCACCTCACCATCCCAATCCCCTACTCCGTCTCGCATGAAGCTGCGTAGTCAAGACTCCACACGCTCTGAGCAGGAAGGGCCCATGCACAGACATGTGTTTGACCCAGTAGCTCAGCACAGAGACTGGTGTCCTTGGGTGAGTGTGGAAAAAGAGAAGGGCAATCTAGATGGCTCTGTCTTTGTTGGCTGTGAAGCAGAACTCCCTCAACCAGGCTGGAAAGCAGCGCTCACCCTGTTCTTATCCATGAAAAGAAGCCTTAGTCCAGTAGGAGCCAGTCCATCTCAGGGTCCTCATGACAAATCAAAAAGGGTGTTCTCGATATTCCGACAGTGGCAGGTATCTTACCCAAGCCATTATGGGTTTGGTTGGGAAAGGGACAGTAAATCCACACGGATCAAGCGGCCTGTGCTGAAAGACCTTGCCTTGGAGCAGGAAAGCCCAGCAGAGTTCTTCTCAGAAATTGTAACTTTACCACACTGTTTTGAATCTGGGCCTGTCCAGTCGGCATTCAAACGTCAACAGACCGGTGGCCGGTGCTCTTTACCTCACATGGACTGCCGAATAGTCCTTGCCACCTCAGGCTTTAGGGTTTTAGCCTAATTTAGGGAAGCTTTAGTGAAGTTTCTAGACCTACACTGGAAGACATGCTAGTTTTATCATCGCTGGACAGTTTTCAGATTAGCCAAGGATTTTTCTGCATTGTTTAAGTAGGTATGTTATATTTACTTCCATAAATGTGAATGAGCTTAGTATCTCATTTTTAAAGATGTTTATCACTTATCTTTTACCCACATGCCAGCTGAAATGGATGCCATGTTTAGAAAAGAGTGCCAATGTAAATGGTTTTGCTTTTAGACCACTTTCTTTGTAAGTGCTGCCTGTAGTGCCCTTTGTAATGCATGCAATTCTTGTGCATCTCTACCTAAATTGAATAAA

Function

symbol description
zc3hc1 Predicted to enable zinc ion binding activity. Predicted to be active in nucleus. Orthologous to human ZC3HC1 (zinc finger C3HC-type containing 1).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_03335308_03338805.mRNA True 1948 mRNA 0.45 9 3334972 3339019

Neighbor

gene id symbol gene type direction distance location
CI01000020_03304491_03309596 UBE2H coding downstream 24724 3300912 ~ 3310248 (-)
CI01000020_03282336_03296954 NA coding downstream 37722 3282276 ~ 3297250 (-)
CI01000020_03272487_03278811 NA coding downstream 55774 3272443 ~ 3279198 (-)
CI01000020_02924213_02955174 NA coding downstream 379757 2923453 ~ 2955215 (-)
CI01000020_02828968_02849511 NA coding downstream 485461 2828763 ~ 2849518 (-)
CI01000020_03350468_03358669 CAX1 coding upstream 11434 3350453 ~ 3358669 (-)
CI01000020_03362565_03367403 SMO coding upstream 23357 3362376 ~ 3367559 (-)
CI01000020_03370073_03375747 TSPAN33, TSPAN33A coding upstream 30842 3369861 ~ 3375747 (-)
CI01000020_03393384_03396967 BRAFLDRAFT_126283, PSMC2 coding upstream 54365 3393384 ~ 3396967 (-)
CI01000020_03409070_03412685 AKR1B1 coding upstream 69600 3408619 ~ 3412842 (-)
G113174 NA non-coding downstream 109420 3225240 ~ 3225552 (-)
G113162 NA non-coding downstream 129967 3204773 ~ 3205005 (-)
G113139 NA non-coding downstream 131683 3202959 ~ 3203289 (-)
G113138 NA non-coding downstream 134332 3200289 ~ 3200640 (-)
G113160 NA non-coding upstream 52810 3391829 ~ 3445455 (-)
G113231 NA non-coding upstream 113601 3452620 ~ 3452938 (-)
G113249 NA non-coding upstream 133528 3472547 ~ 3472806 (-)
G113254 NA non-coding upstream 140326 3479345 ~ 3479635 (-)
G113256 NA non-coding upstream 145007 3484026 ~ 3484245 (-)
CI01000020_02121873_02122329 KISS2 other downstream 1212598 2121714 ~ 2122619 (-)
G112136 NA other downstream 1213740 2040034 ~ 2121232 (-)
CI01000020_01463785_01480876 GNPTAB other downstream 1849994 1463771 ~ 1481058 (-)
G113375 NA other upstream 422426 3761445 ~ 3847924 (-)
G113802 NA other upstream 1405500 4744519 ~ 4746050 (-)
G114747 NA other upstream 2185587 5524606 ~ 5525234 (-)
CI01000020_05958448_05959900 NA other upstream 2619432 5958221 ~ 5960015 (-)
G114926 NA other upstream 2820291 6159310 ~ 6162609 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location