CI01000020_03350468_03358669 (CAX1)


Basic Information

Item Value
gene id CI01000020_03350468_03358669
gene name CAX1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3350453 ~ 3358669 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_03350468_03358669.mRNA
AGCCCCTCTGGGACCATGACCTTAAAGGTCGCCGCTGTAACTCCCAGTGTGACAGACTGTGTGTAGCTGGAGCATATCTTGAGATCCCAGATACTCCTTCCCCCTGCACCTCCCAGTATTTCGGACACTACACCCCGAAATGCCTCTCTACCCACAGGCATTCCCTGCATTCACGATGCACGGATGACATTTGGCAGGAAGCGAGCATCAGAACCACCATCCGAGCAGAAAACGAGGTGGAGGCACATAAACTTGCCAACAACTACAGGTTTGGTTTCAGGAAATGGAAGAGTCATGTAACCGAGCGGCCCATTGAGGACAGATCTGATGTAGTTAAGGAGCTTTATTCTGAGCTCAACTATATCAAACATCATTCAGGAAAACTCTGTTTGGAGCTGTCAGGTTATTTCTTATGGCCATTTGGGAAGGCATTGCAGAAAAGCAGCAGCCTGGTTAGGAAATGTTGTATAAAATTCCCACACTGTGAGGCCATTCCAGAGGAGGTGGATGAAGTAAAGGAGTCTTTGGAGGTGAAAGAATCTACACCTCTGCTGTGCCCCGCTCCTGCCGTTAACACAGAAATCCCTGTGCCTACGCCGCCCCCCAGGCAGACGCGTTACTGGTGTCGTTTGAGTACGTATGTTTGGCTGATGCTGGGATACCCCCTGCTGGCTGTGGTTCACTCCCTGGCCATCTTCCTGTCCTGGATGATGGTGTTCACTATCCCTGTGTCAAAGATGAACGCCAGGACCTTGAGCATCATCCTGCTCATGCCACCGGAAGAGGTCAAAGTTCGGACTGTGAAAAAGCCACAAGGTTGTGAGACCAGAGTTCTTCTTTGTTGTTACCGTGCCTTCAACTGTATTTATAGAGCTGTTAGAATCTTTAAAAAACAATATTCAGACCTCTTGCCGCTGGTTATCATCACTCTGGTGATCGGCTATGTGGACAAAGATAATTATTTTGTGAGCTCAGAGGTAAAGTTTGCCACAGCAGTGAGTTCCATTATCCCATTGTCCTACTACATTGGGATGGGGATAGCAAGTATTTCCGCCCAGAGTAACTTTGCAGTGGGAGCAGTAGTAAACGCCACGTTTGGCTCGATTACAGAGATGGCCTTCTACATCACAGCTTTGCTGCAGGGTCACCGCGCAGGAAACAAGTGCTATGCAGAGATCGTCAAAGCTGCTCTCACCGGCACCCTGCTGGGCTGCATCCTCTTCATACCTGGGATCTGCATGATCATTGGGGGCTGTAAGCACAGAGAGCAGCGGTTCAACAGCAGGTCGGCAGGGGTCAGCTCAGCCCTGCTCTTCATATCAGTAGGAGGTGTTTTCGCCCCTACGCTGTTTTCAAAAGCTTATGGAAACTTTATATGTGAGGGCTGTAACAACTCACCTGGTAACACCACAAAGCCCTTCATATGTAACAATTGCCACTATGACCTGTATTTTATTGGAGTTACTGTATTGGCCATGGTTCCCGAGCTTCCTGAGATAGTCAATGGGATCCAGTTTGCTCTTCAAAACAACATCAGTCTCAGCCTGGAAGTGGGGAGCTGTATTGCAGTTCAGGTGTGCATGCTGCAGATACCGTTACTGATCATGTTCAATGCTTTTTATGATGTTGGATTCGTTCTCATATTCAGTGATTTACACCTCTGGGCAAGCATCTTTAGCGTTATCCTGGTCAACTACATATTTATGGATGGAAAGTCGGACTACTTCCAGGATTTAAAAACACCAGAGATACAACACAACCAGCAGTTTGAACAAGTTTATTAATTTTTCAACAATAAA

Function

symbol description
cax1 Predicted to enable calcium:proton antiporter activity. Acts upstream of or within calcium ion transport and neural crest cell development. Located in endomembrane system. Is expressed in neural crest cell.

GO:

id name namespace
GO:0014032 neural crest cell development biological_process

KEGG:

id description
K07300 chaA, CAX; Ca2+:H+ antiporter

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_03350468_03358669.mRNA True 1799 mRNA 0.47 15 3350453 3358669

Neighbor

gene id symbol gene type direction distance location
CI01000020_03335308_03338805 ZC3HC1 coding downstream 11434 3334972 ~ 3339019 (-)
CI01000020_03304491_03309596 UBE2H coding downstream 40205 3300912 ~ 3310248 (-)
CI01000020_03282336_03296954 NA coding downstream 53203 3282276 ~ 3297250 (-)
CI01000020_03272487_03278811 NA coding downstream 71255 3272443 ~ 3279198 (-)
CI01000020_02924213_02955174 NA coding downstream 395238 2923453 ~ 2955215 (-)
CI01000020_03362565_03367403 SMO coding upstream 3707 3362376 ~ 3367559 (-)
CI01000020_03370073_03375747 TSPAN33, TSPAN33A coding upstream 11192 3369861 ~ 3375747 (-)
CI01000020_03393384_03396967 BRAFLDRAFT_126283, PSMC2 coding upstream 34715 3393384 ~ 3396967 (-)
CI01000020_03409070_03412685 AKR1B1 coding upstream 49950 3408619 ~ 3412842 (-)
CI01000020_03429337_03436635 KIAA1644 coding upstream 70478 3429147 ~ 3436635 (-)
G113174 NA non-coding downstream 124901 3225240 ~ 3225552 (-)
G113162 NA non-coding downstream 145448 3204773 ~ 3205005 (-)
G113139 NA non-coding downstream 147164 3202959 ~ 3203289 (-)
G113138 NA non-coding downstream 149813 3200289 ~ 3200640 (-)
G113160 NA non-coding upstream 33160 3391829 ~ 3445455 (-)
G113231 NA non-coding upstream 93951 3452620 ~ 3452938 (-)
G113249 NA non-coding upstream 113878 3472547 ~ 3472806 (-)
G113254 NA non-coding upstream 120676 3479345 ~ 3479635 (-)
G113256 NA non-coding upstream 125357 3484026 ~ 3484245 (-)
CI01000020_02828968_02849511 NA other downstream 500935 2828763 ~ 2849518 (-)
CI01000020_02121873_02122329 KISS2 other downstream 1228079 2121714 ~ 2122619 (-)
G112136 NA other downstream 1229221 2040034 ~ 2121232 (-)
CI01000020_01463785_01480876 GNPTAB other downstream 1865475 1463771 ~ 1481058 (-)
G113375 NA other upstream 402776 3761445 ~ 3847924 (-)
G113802 NA other upstream 1385850 4744519 ~ 4746050 (-)
G114747 NA other upstream 2165937 5524606 ~ 5525234 (-)
CI01000020_05958448_05959900 NA other upstream 2599782 5958221 ~ 5960015 (-)
G114926 NA other upstream 2800641 6159310 ~ 6162609 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027220 cax1 coding NC_007115.7 CM002888.2 14981854 ~ 14990926 (+)