XLOC_008154


Basic Information

Item Value
gene id XLOC_008154
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 49005319 ~ 49007824 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016489
CCTGGGTCCATGAACGTGGCCATACAGAAATTGGCCAAAGTGAAGAGGAAGACCACAACATTATAGAGCGGAATGAAGGAGGAAAACTTTTCCGACAGCCAAGGACacctggacaaaaaaaaaacagcactctTTACACTCAGAGTAATGCTGACACACAGTACTGACGTTATTAGCGTCTACTCACGTAAAACACAGGAACAGTGTCGTGGCTCCCACAAGGAAAGCGGTGGCTGCAGACACAGGCACATATCGACTGGGGCGGAAGGGGCGGGATGGGGAGGGGTCTCCGAGAGCCCCGCCCACACTCAAACCCACAGGCATTTGGAGAGATCCAAAATACAGAAGAACAGGGGGAGGCGTCAGAAAGAGGAGGACACTCGCCTCCTGCCTGAGTGAAGATGATCTGCAGCCATGGCCATTAAAACAACTACGATCTCACAAATCAAGGTACACTTCTCTCTGAAATCAACGTAAAATAGTGCACTTCTCTACTAAATCACTGCAAAGTAGTGCACTTCTTTTCTAAAATCCACTAAATACAATGCACTTCTCTCTTAAAATCAATGCAAAATGGGGCACTTCTTTTCTAAATCAATGCAAAATGGTGCAGTTCTTTCTTTTATTGACTAAATACCAAGCACTTCTCTCCTAAATCATTGTGAATTAGCAAATTTTTGTCCTAAATCAACATAAAATAGTCTCTCCTGAACCAATGCTGCAAAATAGTGTATTTCTCCTCTAAATCAATGCAAAATGGTGCAGTTCTTTGCTAAACCAATGCAAAATAGTGCACTTCTCACCTAGATCAATGCAAAATtgtgcatttttttcttaaatccaCTAAAAACAATGCACTTCTCTCCTAAACCAATGCAAAATAGTCCAATTTTCTCCTAAACCAATGCAAAAGGGTGCATTTCTCTCCAAAACAATTGCATAACGGTGCACTTCTCTTCTAATCCAATGCAAAATAGTGCACTTCTTTCTGAAATCCACTAAAAACAGTGCACTTTCCTCCTAAATTGTGAGCATTTTCGTCCTAAATCAAGCTAAAATAGTGCGCTTGTTTTTTAAATCCACAGAAAACAGCTCACTACTCCCCAAAATGAACATAAAATAGGTCACTTCTCTACCAAATCAATGCAAAATAGTGCATTTCTTTCTTAAATCCACATGATATAATGCACTTCTCTGCTAAACCATTGTTAAAGTTTGTCCTTAGTGCACTAAATCAATGTGAAATGGTACACTTCTCTCttaaatgcatgtaaaatagTGCAGATGAATTCTGTTTTTTATCTGACTGCATGTGCTGATCGATAAAAAATAGACTAAATTCATTTACACACAAAAGCGATATAATGatctactgtaaatataaaaatagctctattttaatcaaaaaaaatgttcatatggCTTTAATGTAACAAGATTCGGTCAATAAAAGGAAACAAATCAAGTGACAGCAAAGCTCTTTTAGTGCAAATCTCTGGTAAGCCCCGTGTTACACTGAAAAGAGCCTTAAAGGAAGCAGCGATTTGAGTTCAGGCATTCATACAGTGCTTATTCATATCTCAAAACATCACAGCGGATAAGTGCATGTGAGCATGACGTCAAACTACAGAAACcaagaaaaaaaaggaagaagtTTTGGTGGGAGGAATACAGTCAAGCAAAAAgggaagaaattaaaaatatgaatttcttTCTACGATCTCAACGGGAGTCTGGATTCCCCCTGGAGCAGTCCGTCTAAGAAAAGACCGTAATTACgagtacaaaatataaaatagagCTCTTGATGTCTTGTGCCCTAAATGAGAGCTCATTCTCCTCTCCGGGTTGATATTTGCTCACACTTTAGTAAGAGACGAACTTGCCCAAATGGATCACATGAATCTTGTGGATATGCACATGGTAACGTGGCAGGATGGTTCTTCAGAGGTTCATACGGAAAAAAGCCAAGTGTGTGGCCATCATCGCAACTGCGTGTGATCTGTGGGTTGAAAACTCCAGGTCGTGGTGACACACATGCATGAAAAACCATTATAACCCTGCATAGTGTCCCATGAGGCCTTTCTTTCCTCAATAACGCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016489 True 2103 lncRNA 0.40 2 49005319 49007824

Neighbor

gene id symbol gene type direction distance location
XLOC_008153 si:dkeyp-121d2.7 coding downstream 44263 48944320 ~ 48961056 (-)
XLOC_008152 scocb coding downstream 65759 48932235 ~ 48939560 (-)
XLOC_008151 NA coding downstream 161895 48837748 ~ 48843424 (-)
XLOC_008150 si:ch211-199b20.3 coding downstream 218611 48766996 ~ 48786708 (-)
XLOC_008149 cnot6b coding downstream 240057 48734794 ~ 48765262 (-)
XLOC_008155 NA coding upstream 25733 49033557 ~ 49035153 (-)
XLOC_008156 sept8b coding upstream 32366 49040190 ~ 49063157 (-)
XLOC_008157 NA coding upstream 61036 49068860 ~ 49073654 (-)
XLOC_008158 sfxn1 coding upstream 70782 49078606 ~ 49110280 (-)
XLOC_008159 ppp2ca coding upstream 111036 49118860 ~ 49133426 (-)
XLOC_007641 CU855896.1 misc downstream 46597479 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 46597888 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 46598247 2406945 ~ 2407072 (-)
XLOC_008148 NA non-coding downstream 297246 48665871 ~ 48708073 (-)
XLOC_008146 CR376827.1 non-coding downstream 428619 48576584 ~ 48576700 (-)
XLOC_008145 CABZ01080059.1 non-coding downstream 655717 48349487 ~ 48349602 (-)
XLOC_008137 NA non-coding downstream 2329469 46629901 ~ 46675850 (-)
XLOC_008160 NA non-coding upstream 201946 49209770 ~ 49214604 (-)
XLOC_008162 NA non-coding upstream 327819 49335643 ~ 49336116 (-)
XLOC_008163 NA non-coding upstream 363692 49371516 ~ 49373336 (-)

Expression


Co-expression Network