XLOC_008155


Basic Information

Item Value
gene id XLOC_008155
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 49033557 ~ 49035153 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016087
cagaacttggggaagaaatatacaggggggctaataattcactcATAAATGACCGAACCGCACTACAAAATAAGGAAACTCAGCTTGTGTTCACACTGGAATCATTTATTGTTCTGTTGAAAACGTGTTGCTCAGAGTCAGCAGCATTAAAGGAAACACAGaagggttaaaaaataaaaactcaagcCCAAACCCCTCAGAAGAGTTATAAAGGCATCATAAGGCCATGATGGAAATGACAAACAAAACCTTGCATGTGTCTCTGCATAAGGGGTTTATATCTTACAATTCTCCTCAAGAGACGAGATCTGAACACAAGCGAGATCTGGAATGTGCTTTTGTGCAACagtcagaaatatatatatatatatatataacacacactcattctcacatacacactcactcacgcaCACAAATACAATCCGCATCACATTAACAcagggcttttcacacttgaaCTTGAGTGAATCCTCGGTCATAACTGTTTGTTAGTTACTAACTTATTATTAgttacacttattattattattattgttacatttCTAATTTGCAAACTGTCATGTCAGTGTCACTGATTGGATAAATGCAGCATGTGACTCGTTTACATAAACACTCTAGAGTCGTTTATCCCCATTGtgttaacatattttattaatgcctaaTAGTTTTTTTCACTTCTGAAGTTTTTTCTCACCAATTTAtgcattgtctttttttttaaacacatatgTGTAAATGTATGCAAATCTGTCATTTATATGCaacatacatttcaaaatttaatttCCATTGTTgttcacacctggatttggggatcctctgccattaTTAACTTTATAACAACTttgtgactgttcttgaatggcccagccagagtcctgacttaaacccaattgagacCTAGATATAGCTGTCCACCAATGTTTACCATCcgacctgacagaactggagaggatctacaagcaggaatggcagaggatcccccAACCCTGGTGTGAAAAACTTATTGCTTCTTTCCCAATAAGACTCACGGCTGCATTAGATCAAAGGGGGCTTCAACTAAATACTGAGCAGAGTCTGAATATGACCATGTGaaattttaatttttcttttttaataaatctgcaaaaatgtcaacatttctgtgtttctctctctctctttccctctctctctctctctctctctctctctatatatatatatatatatatatgagcaatatcacactcgtagcagtgcgatatggctgtatatcggcactggtgggaggcgtgcgttagtgTCCCCACCAGTGCcgttatacagccatatcgcactgctacgagtgtgatattgcgttcatacaacagtttgacggcataattgtgtatataaaaactaaatcaaacatggagagtctcaaaaacccttttgtatgtggaactactttcttccgcgttggattcaaatcataagctgacagttaaacagccgaGCAACCatcttacat

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0001501 skeletal system development biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0070469 respirasome cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016087 True 1495 lncRNA 0.38 2 49033557 49035153

Neighbor

gene id symbol gene type direction distance location
XLOC_008154 NA coding downstream 25733 49005319 ~ 49007824 (-)
XLOC_008153 si:dkeyp-121d2.7 coding downstream 72501 48944320 ~ 48961056 (-)
XLOC_008152 scocb coding downstream 93997 48932235 ~ 48939560 (-)
XLOC_008151 NA coding downstream 190133 48837748 ~ 48843424 (-)
XLOC_008150 si:ch211-199b20.3 coding downstream 246849 48766996 ~ 48786708 (-)
XLOC_008156 sept8b coding upstream 5037 49040190 ~ 49063157 (-)
XLOC_008157 NA coding upstream 33707 49068860 ~ 49073654 (-)
XLOC_008158 sfxn1 coding upstream 43453 49078606 ~ 49110280 (-)
XLOC_008159 ppp2ca coding upstream 83707 49118860 ~ 49133426 (-)
XLOC_008160 NA coding upstream 174617 49209770 ~ 49214604 (-)
XLOC_007641 CU855896.1 misc downstream 46625717 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 46626126 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 46626485 2406945 ~ 2407072 (-)
XLOC_008148 NA non-coding downstream 325484 48665871 ~ 48708073 (-)
XLOC_008146 CR376827.1 non-coding downstream 456857 48576584 ~ 48576700 (-)
XLOC_008145 CABZ01080059.1 non-coding downstream 683955 48349487 ~ 48349602 (-)
XLOC_008162 NA non-coding upstream 300490 49335643 ~ 49336116 (-)
XLOC_008163 NA non-coding upstream 336363 49371516 ~ 49373336 (-)
XLOC_008165 NA non-coding upstream 453728 49488881 ~ 49490719 (-)

Expression


Co-expression Network