CI01000020_04105843_04123658 (NRCAMA)


Basic Information

Item Value
gene id CI01000020_04105843_04123658
gene name NRCAMA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4105722 ~ 4123658 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_04105843_04123658.mRNA
TGCCTCAGCCTCCCACAATAACTCATCAGTCCCCCAAGGATTACATCATCGACCCTCGGGAGAACATCATTATCCACTGCGAAGCGAAAGGAAAGCCTCATCCCAGCTTTTCATGGACACGTAACGGCACTCATTTTGATGTGGAAAAGGATTCAAAAGTTATTATGAAGCCCAGCTCAGGCACTCTGGTCATTGACATCAGCGGAGAGAAGGCAGATGCATATGAGGGCGTGTATCAGTGCATCGCCCGCAATGAGCATGGCTCTGCCTTGTCCAATAACATCGTCATTCGTCAGTCAAGGTCCCCCTTGTGGTCAAAAGAGAAAAATGAACCAATCACGGTGCAGAGGGGAATGTCTCTAGTACTGCAGTGCAGACCCCCGGCTGGCCTGCCTCCTCCAATCATCTTCTGGATGAATAACAATTTCCAGAGATTTCCTCAAAACAGTCGTGTGTCCCAGACTTTAAACGGAGACCTGTATTTCTCCAATGTGCTCATGGAAGACAACAGAAGCGACTACATCTGCTATGCCCGCTTCCCACACACTCAGACTATCCAACAGAAACAGCCAATCACTGTCAACGTGCTGGACATCGAAGCTATGAATGACACTGTGTTGGCAGCTTTTTTGAATGGCTCAGATTTTTGGGGTGACAGTCCATCTGGGGAGAGAGTGCCCACTTTCATGCACCCACCAGGAACGCACAGTACCACCATGGTCCTGAAAGGAGACACGCTGGAGCTGGAATGCATCGCTGATGGCCTTCCAACGCCAGATATCTCCTGGACTAAAGTGGTCGGGGAGCTGCCAAGCGGCCGTTTCTCATTTCACAATTTCCAGAAAACTCTGAAGATAACAGAGGTGACAGAAGCGGATGGGGGAGATTATCGCTGTTTGGCCAAGAATCGCCTGGGGAGCAACCATCATACCATCACTGTAGCGGTCAGAGCGGCTCCTTTTTGGATCAGTGCCCCTCAGAACCTCATCCTGGCCCCGAAAGAAACCGGAATGCTCACCTGCCGGGTGGGTGGCAACCCTACACCCAAAGTCACATGGTCTGTCAACGGAATCCCCATTGAAAACTCACATAAGGACCCCAGTCGGAAAATCGAAGATGGCGTTATCATCCTCAGTGATGTTCAGACAGGCTCAAGTGCTGTTTACCAGTGCAACGCCTCCAATGAGTTTAAAGACAGTCAGAGCATACTGGATGGCGACTCTTACATCATTCATAAAAACGGTACCTTAGAGATCAGTGTGGCTCAGTCACTAAACAGTGGCAAATACACCTGCATGGCCTCAAACAATCTTGGCAACAAAGAGAATCACGTTTACCTGGAAGTGAAAGAGCCTACACGGATCCTTAAACAGCCTGGGTATAAAGTGGTCCACAGAAACAGCGTGGCTGTGTTTGAGTGTAAGGTCAAACACGACCCCACTCTCTTCCCCTCCATGATATGGCTCAAAGACAATGGAGAGCTTCCTGATGATATTCGATTTGAGGTGGGCCCTGATAGTCTGACTATACATGAAGTGACGGAGGATGATGAGGGCACCTACACCTGCATCAGAAACACCACCCTGGACCACGATTCAGCCAGCGCCACACTCACAGTTGTCGAGAAACCAGACCCGCCCACAGACCTGGAGCTGACGGACCAGCGAGAGCGCAGTGTTCAGCTTACATGGACCCCTGGCAATGACAACAATAGCCCTATTAAACTGTTCCTGATCCAATATGAAGATTCACTCCACGAGCCCGGAGTATGGCACAATATGACCAGCGTCTCAGGAACCAGCACCACATCCCAACTGGATCTTTCCCCACATGTGTATTACTCCTTCAGGGTTCTGGCACTTAATGACGTGGGTCCCAGTGAACCCAGTGCACCATCCAGACAGTACCGAACCAACCCTGCACAGCCTGACATGAATCCATCAGACGTTGAAGTCTTTGGAACGTCACCTGACAGCATGACAATAACTTGGAGGGAGCTGACTGGGCTGGAGTCAAACGGTCCAGGCCTTCAATACAAGGTTAGCTGGAGAATGAAAGATGCGGATCGCTGGACGTCGCTCACTCTGGCCAATGTCTCGCAATACATGGTGACAGGAACGCCCACTTTTGCACTCTATGAAGTTACCGTGCAGGCGGTCAATGACTATGGACCTGGCCCCAGACCAGAGGTGGTGCTGGGATATTCAGGAGAGGACTCACCAACTGTAGCCCCAGAGAACATAAAAGTTTCAGTTCAGAACGGGACAGTTGCTGAAGTTCGCTGGGATGCTGTTCCTCTTTCAACAGTCCGGGGTCGACTGAAGGGATATAAGGTGAGTTACTGGAAGATGAGAAGCTTACATAAGCAAGACTCTGAGCCTGAGAAGCCACAGGTGCTCATCTTCAGTGGGAACGAGACAGAGGTTCGTCTGCCCGGCCTTCATCCCTACAGCCAGTACACCCTCAACATTAGAGCATTCAATGGGAAAGGAGACGGACCCACCAGCTCAGATCAGCAATTTGAAACACCAGAGGGAGTTCCCGGGCCTCCTACACATTTAAAAGTCCGAAATCTGAACCTGGACTCACTGATTTTGGAGTGGGCACCACCTCTGGAAGATAATGGCCGCTTGACAGGATACTTGCTCAAATACCAGTCTTTCAATACAACCGATGAACTTGGGCCGCTCAAAAAGGTGACTCTACAAGCAAACGAGACCAGCATCACTCTGGACAACCTCAATTACAGCACGCGCTACAAGTTCTATCTGAATGCCATGACTATCAAGGGCTCTGGCCCCGCTGTCACAGAAGAGGCCGTCACAATCATGGACGAAGCGTTAATTCGGCATCCCGCAGTAGAGGCGGGTAAAGGCTCAGCCCCCCCTTCACCACCACCAACCCCCCCTGTCACTCAATCTTTGCAGCCCCCGTTTCACAAGGCACCACCTGCTGGTCGGATGTTTGGGAGTGTGAACTCCTCGGTGGAGGAGGACCATGCTGTGATAAGCTGGGAATACTCTTGGCCGGATAGGAATGTTTATGTGGAATATGTTGTTGATAACAGTAAAGAACCCTGGAAAACAGAGTTTGTAAATGGCACTCGGACATATCAGCTTAGAGGACTAAAGCCGGGGATGTCTTATAGGGTTCGGGTGGTAGCCAAAGACCACTCAGATGCAACGGTCCACAGTACAGAGGAGCTGTTGATTACAGTTCCAGCCATGACCAACAAGCAGGTTGACATTGCCACGCAGGGCTGGTTTATCGGGCTGATGTGTGCCATTGCTTTACTGATCCTGGTGCTTCTCATCGTTTGCTTCATAAAGAGGAACAAAGGAGGCAAATATCCAGTAAAAGAAAAAGAAGATGCTCATCAAGACCCAGAGATCCAGCCCATGAAAGAGGATGATGGGACATTTGGGGAGTACAGTGACACGGAGGATCACAAGCCCCTGAAGGGCAGCCGGACCCCATCCAATGGCACGGTTAAGAAGGACGACAGTGACGACAGCCTGGTAGATTACGGCGAGGGAGGAGATGGCCAGTTCAATGAGGATGGCTCATTCATCGGCCAGTACAGCGGGAAGAAGGAAAAAGACACGGCGGAGGGCAACGAGAGTTCGGAGGCTCCTTCCCCGGTCAACGCCATGAACTCCTTTGTGTAACTGCCTGGATATGCCTCGTGAACTTTGACCCATCCAACGCCCCTCCTCCTTGTCACACCATCATACGGAGAACATTCTCTATTGCACTGTGACCCCGACATCACACAGCAAAAGAAATAAA

Function

symbol description
nrcama Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NRCAM (neuronal cell adhesion molecule).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06756 NRCAM; neuronal cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_04105843_04123658.mRNA True 3789 mRNA 0.51 27 4105722 4123658

Neighbor

gene id symbol gene type direction distance location
CI01000020_04089784_04102212 CNTN1, CNTN1B coding downstream 3510 4089569 ~ 4102212 (-)
CI01000020_04028318_04041538 PDZRN4 coding downstream 64184 4027498 ~ 4041538 (-)
CI01000020_03967766_03983729 PPHLN1 coding downstream 121993 3967554 ~ 3983729 (-)
CI01000020_03747339_03750711 PRL2 coding downstream 354658 3746966 ~ 3751064 (-)
CI01000020_03732545_03743107 NUAK1, NUAK1A coding downstream 362615 3732135 ~ 3743107 (-)
CI01000020_04163168_04174402 PNPLA8 coding upstream 38574 4162232 ~ 4174677 (-)
CI01000020_04177484_04184880 NA coding upstream 53820 4177478 ~ 4184880 (-)
CI01000020_04193622_04195369 NA coding upstream 69781 4193439 ~ 4195369 (-)
CI01000020_04195892_04207990 TNPO3 coding upstream 72234 4195892 ~ 4208171 (-)
CI01000020_04220852_04223533 CALU, CALUA coding upstream 96175 4219833 ~ 4223533 (-)
G113382 NA non-coding downstream 295465 3805725 ~ 3810257 (-)
G113372 NA non-coding downstream 347523 3757860 ~ 3758199 (-)
G113357 NA non-coding downstream 401601 3703848 ~ 3704121 (-)
G113356 NA non-coding downstream 402456 3702979 ~ 3703266 (-)
G113354 NA non-coding downstream 404154 3701117 ~ 3701568 (-)
G113522 NA non-coding upstream 85736 4209394 ~ 4209718 (-)
G113525 NA non-coding upstream 86782 4210440 ~ 4210658 (-)
G113550 NA non-coding upstream 149059 4272717 ~ 4272920 (-)
G113581 NA non-coding upstream 257367 4381025 ~ 4381293 (-)
G113612 NA non-coding upstream 295477 4419135 ~ 4467635 (-)
G113375 NA other downstream 257798 3761445 ~ 3847924 (-)
CI01000020_03304491_03309596 UBE2H other downstream 771160 3300912 ~ 3310248 (-)
CI01000020_02828968_02849511 NA other downstream 1256204 2828763 ~ 2849518 (-)
CI01000020_02121873_02122329 KISS2 other downstream 1983348 2121714 ~ 2122619 (-)
G112136 NA other downstream 1984490 2040034 ~ 2121232 (-)
G113802 NA other upstream 620861 4744519 ~ 4746050 (-)
G114747 NA other upstream 1400948 5524606 ~ 5525234 (-)
CI01000020_05958448_05959900 NA other upstream 1834793 5958221 ~ 5960015 (-)
G114926 NA other upstream 2035652 6159310 ~ 6162609 (-)

Expression


Co-expression Network