XLOC_008157


Basic Information

Item Value
gene id XLOC_008157
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 49068860 ~ 49073654 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016490
ATtgagtttcttaaaaaaaataaaaatatgtaaattacttttcagacaaagtaatgAGGATAAAAAGATACATTTATTGGGATTTTATTAAGATTTACAGGAATCTTAATAGTATTGAGTCTTACTTAAGTAACTAAATTACTTTTCTTATTAATTTGTCTGAAAAGTACTCAATACTACTTAAAATCCCTATAAATCTCAATGCATAGACTATagaaactatttttgtttttaaattcaagtaaaacatttttttaagtattaaataaaataataaatggtaTGGATGAAATATGGTGTCATTGCTTTCAAAAGTGTAATGTTTGATCGATATATTATTTAGTCATTAATTTCCTACTCGATTTATTGTTTATCCAGCATGTGCAATTGTCCTGATGAATGAAACCTTCAGTTGAATTATTCTGAAAAATATATtgcataatattaataaaaacgaCTACTCTGAAATTACTTATACAGATCTGTTGAATTCATATACATTAGGGCACATATTTAATAATTAGCAACTGTGATTAGATTACTGAAAAGTAATCCCTGGTCCTTTTTCAGCTAAACAAAACCACCCATCACTGAACTGCGTATTGAGAATTACATTTTAAGctcatataatattataaaaatctaACCTACCAGCACAATTAGTTTAAAATGCAATTCTTTGATGAACACTATTAGGAAACAATGCAATCTGTTTAATCAGCAAACATGCTTCTGGTTTTAAAGATGAGGATTTTTCTATGTACATTCAGCTGTATTTTTAGATTTGTGAACTTTGCAATAATTGACTTGTTCTCCAtgtgttgtttaaatgtttaatgtgtaaCCTACTGATGGTTATCTGTGCTGTTGTGATGTTCACGTTTGTTCAGTTGATGAATGTAGTGTTGGCAGTAATGAAATCAAACTGAGATCTAGTTGGCTTTTTGGTTTTAAGTGTGACAAAATAACCCATGTGCTTCAAAATGTCCCTGCAAGTTTTCAGTATTACACATCAGCTCATATGTTAGAcagtaaatacactgtaaaataagatgttgtctcgtttctagtctaaatatctaacaattaataaaccaagaagcattttctagaccagcaaaagatattgtcttgttttcagaaataataaggtaaaattaagtgagttttcattaaaacatgcaaaataatcttgttttttgctttgagatgagtttattttgcttgttttaaggaaaaattttGTGGCCAAAATACACAAACAGGCCTTTTCATTTGAACATTCAAGTCACTTTTGAGGACAAATATTAAAGCAACTGCATCAGTGTTGGGTGAGTTACTTCAAAAACTGTATTCAAATTACTTTGTCTAAAAAATTGCATAcagtttaattcaatttattgaGATTTATATGGATTTTAAATAGCATTGAGTCTTAATTTTTGAGtaattaaatcacttttcttattattttgtctgaaaaaattactcaataagtaaaatctttataaatttcaataaattgagttatttaaactgtatttaaaatacttttcagacaaagtaataAGGAATAAATACTACTTTTCGAAATAACTCAATTTATAGGGATTTTATTGGGATTTATAGGAATTTATTGAGTCTTAGAGTACTAAAATTACCTTCTAATAAGTTTAATTACTCAATACTACTTAAAATTACTATGAGACCTCTATAAATTAAGTAACTTCAAAAaccaaaattttattatttagagAAAGTAACTGAAATACAGTTTAAGTAACTCAATGTATTAAGATTTATAGGGATTTTAAGTAGTATTGAGTCTTGAggaattaaattactttttcagacaaagtaataagaaaagtaatttattaatcaataatactCAATACTATTTAAATTCCTATAAATcccaataaatactttttttttcgaAGTAACTCGATTTATAGGGATTTTACTGAGATTCATAGAAATTTAAGTATGATTGAGTGTTACTTTGAgcaattaaattacttttttagatAAAGTAATAAGAAAAGTAACTTAATTACTAAATAATTAAGACTCAATACTACTTAAAATTCCTATGAAACCTCTATAAATTAGTAACTTCAAAAAccaacatttaattatttagagAAAGTAACTGAAATACAGTTTAaggatttaaatataatttaaatatataatttaaatatagtgATTTAAAGTAGTATTGAGTCttgagtaattaaattactttttttcagacaaagtaataagaaaagtaatttaattactcaaTAAGACTCAATACTATTTAAATTCCCATAAATCCCAATAAAACCCCAATAGTTTTTTTCTCATTactcaatttaaatacatttgtttctTTTGAAGTAACTCGATTTATTgggattttatttagattaatagGAATTTAAGTATTATTGAGGTTTACTTATTGagtaattgagtttttttttagataaagtaATGAGAAAAGTAACTTAATTACTCAATAATTAAGACTCAATACTTCTTAAAATTCTGATGAAACCTGTATAAATTGAGTAACTTCAAATAACCACATTTAATTATTCagacaaactaatttaaatactttttttgaaGTAGCTCAATTTATTGGGATTTCATTGGGATTTATAAGGATTAATTAGTATTGAGTCTTACTTGTTAAATTACTTTCTCAGACAAAGTAATAAGTACTCTCAGTATTATTTAAAGATCCTATAAATCCCAATAAAatccccattttttttttcatttctttgtctgaaaagtaatttaaatacagaatttttttaaaagtaactcaatTTATTGGGATTTTATTgggatttataatgatttaagtATTATTGAGTTTCAAATATTTAGGAATTAAATTACTTGTTAGATAAAGTAATAAGAAAAGTAATTTAGTTACGCAATAAGACTCAATACTACTTAAAATTCTTATGAAACCTGTATAAATTGAGAaacttaaaacaacaacatttaattcagacaaattaatttaaatagctttttgatgACACTCAGTTTATTGGAATTTTATTGAGATTTATTAGTATGGAGTCTTATTGAGTAATTAAATGACTTTTTGTTAGTTAtaagaaaatttatttaaatactcaATTACTAAAACTCAATACTACTTAAAATTCCTAGAAATCTCAATACTAATACCAATAAATTGAGTGACCGTctgaaaactatttttttaagtaactcaatttgttgtgattttattgagatttaaaaatatttaaattagtaatttataattaataattgagTAATTAAAACACTTTACTACAAGTGATTTAATTACTCAATAAGTAAAAGTGATTTAATTACTTATAATAATAAGACTCAATACTACTTAAAATCCTTATAAACTGagttacttacattttttttctcattacttttttgactcatttctaaaaacaagcTTATAAATGTGCCCGTCTAtcaaatgcttcttgatttaagatttgatttattaaatttttagatATCTTGACTATAAACATGATAGAAACTCAGCACTTTTGCAAGCAGGTTTTGGATTTAATGatgtattgattattattttgtggCCAGATCAGGGTTGTCTCTTGCATTCGCAGAGCCTgggataaatataaaaaaaaacatcccatttaGTGACACCCTTGGCCAAATAGGTGCTTAGATGTTTATCATTCCTGTTTCATGTGAAGTCTGTGATACTTACGAatcttaaaattaattaatcCTAACCTAAACGCTCAACAACTGCTGTCCTTTCAACATTTTATCCATAATTGAAAACATTTCCTTGTGCATTGAACACACACTGTGTTTTATTTCCAGATGCCATATACACACTAGTATGTAGTCAATAAAAATCAAGGCGTTTGCATACTTGGATCAAAACGGGAACACTGAGGTGAATCTTTACATGAACAAAGTTGCTCTGATTCATACAATAATTTGTTTACAGTAAATGAGATGACGGGTGTAAGATTTTCAagatgaatattttaaaaatgtttcttattttacagtaaatgggGATGTTGTACTGTGTAGATTACACTGTACTGTGTGGATTACCTAAATGAAATAAAGAGTATAATGCAAtggatc

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:1902284 neuron projection extension involved in neuron projection guidance biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006935 chemotaxis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0001501 skeletal system development biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0022900 electron transport chain biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0031638 zymogen activation biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0048640 negative regulation of developmental growth biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0040011 locomotion biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0071711 basement membrane organization biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0061564 axon development biological_process
GO:0045926 negative regulation of growth biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0042330 taxis biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0001666 response to hypoxia biological_process
GO:0031175 neuron projection development biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005588 collagen type V trimer cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016490 True 4149 lncRNA 0.26 2 49068860 49073654

Neighbor

gene id symbol gene type direction distance location
XLOC_008156 sept8b coding downstream 5703 49040190 ~ 49063157 (-)
XLOC_008155 NA coding downstream 33707 49033557 ~ 49035153 (-)
XLOC_008154 NA coding downstream 61036 49005319 ~ 49007824 (-)
XLOC_008153 si:dkeyp-121d2.7 coding downstream 107804 48944320 ~ 48961056 (-)
XLOC_008152 scocb coding downstream 129300 48932235 ~ 48939560 (-)
XLOC_008158 sfxn1 coding upstream 4952 49078606 ~ 49110280 (-)
XLOC_008159 ppp2ca coding upstream 45206 49118860 ~ 49133426 (-)
XLOC_008160 NA coding upstream 136116 49209770 ~ 49214604 (-)
XLOC_008161 n4bp3 coding upstream 190530 49264184 ~ 49286773 (-)
XLOC_008162 NA coding upstream 261989 49335643 ~ 49336116 (-)
XLOC_007641 CU855896.1 misc downstream 46661020 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 46661429 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 46661788 2406945 ~ 2407072 (-)
XLOC_008151 NA non-coding downstream 225436 48837748 ~ 48843424 (-)
XLOC_008148 NA non-coding downstream 360787 48665871 ~ 48708073 (-)
XLOC_008146 CR376827.1 non-coding downstream 492160 48576584 ~ 48576700 (-)
XLOC_008163 NA non-coding upstream 297862 49371516 ~ 49373336 (-)
XLOC_008165 NA non-coding upstream 415227 49488881 ~ 49490719 (-)
XLOC_008166 CABZ01072361.1 non-coding upstream 681180 49754834 ~ 49754950 (-)

Expression


Co-expression Network