CI01000020_04220852_04223533 (CALU, CALUA)


Basic Information

Item Value
gene id CI01000020_04220852_04223533
gene name CALU, CALUA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4219833 ~ 4223533 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_04220852_04223533.mRNA
AGCTTACATGATGAAGATGGAGATTAGGCCTCTGTTGATGTGCTTTGCTCTGTGTGTGGTTTATGCCACCAGCAAACCCACAGAGAAGAAAGACCGTGTCCACCATGAAACACCACTGAGCAGCAAAGAGCATGACGATGGCGCAAACTTTGATTATGACCATGATGCATTCCTTGGGGAAGAGGAAGCCAAGACTTTTGATGACCTGACCCCGGAGGAAAGCAAGAATAGGCTTGGTAAAATTGTGGAAAAGATTGATGCAGACAAGGATGGTTTTGTCACAGAGGCCGAGCTGAAAGCATGGATCAAAAAGGCTCAAAAGAAGTACATCTATGACAACGTGGAAAGGCAGTGGAAGGATTTTGACATGAATAATGATGGCATGATCTCTTGGGATGAATATAAAAATGTCACATATGGCACATACCTTGATGATCCTGAACCTGATGATGGCTACAACTACAAGCAGATGATGGCCAGAGATGAACGGCGCTTTAAAATGGCTGATGGAAATGGAGACCACATTGCTGACAAAGAGGAGTTCACTGCCTTCCTACATCCTGAGGAGTATGAACATATGAAGGACATTGTTGTGTTGGAAACTATGGAGGATATTGATAAGAATGGTGATGGTTTTATTGACCTGGAGGAGTATATTGGTGACATGTACAACCATGAGGATGAAATGGACGAGCCAGAATGGGTGTCGACAGAGCGAGAGCAGTTTTCGGAGTTTAGAGACAAGAACAAGGATGGAAAGATGGACAAAGAGGAGACTATGGACTGGATCCTACCGGCCGACTACGACCATGCAGAAGCCGAAGCAAAGCATTTGGTGTACGAGTCTGACACAAACAAGGATGGCAAACTCACCAAAGAGGAAATACTCAACAAGTACGATTTGTTTGTGGGAAGTCAAGCGACTGACTTTGGGGAGGCGTTAGTTCGACATGATGAGTTTTAATTATTTTTTTCTAGTATAATAGAAAATTACTTTTGAATTTACTTCTTGTTTTGGTAAAAGAATATAATTTATTTTATATTGCTTCATCATAATGCAACACTAATTCCTCAGATTTAGTTCACTTTATAGATTTTCTCTTTTTGCACACGGACACGCATTCACGACACGCTTTCTTATTTTGTTTTTGTTTTATTTTTTTTACTGTAAAGTGTGTTATCAGTGTTTGTTTGATCCGTCTTTGAAATCGTGGTCCATGTACAGCATTATCATTTCAATAACTGTTTATATTTGTTTTTTAATGAGAAGCGGTTTATTCAGAGCTAGATTAAAGGCAATTTTATACAAGCTACTGATCTATGATCAGCTCCCCTTGCTGTTCACAGTCCTGTTCATTAGTATACTATAAGTACTGAACACTCTCAGATTGGTTTCTTCCTGAGGGTTTATACAAATAGGTATAAAATATATGTATATATTAACATGTTTATGTGAATATGTATATCATTTTATACTTGTAATCTCACATTCTTTCCTGTGTATACTTGTCTTGGCACGAATATTGATTATAGGATGATGAGGATCCTCTCCGTTTCTCTCTAAAGGCAATATAGTGTTTTCTTTCTATATTTATTTAGGGGGAAAAAAATCTTCATTCACGCATCCAATGAATTTCTATCATTTGTGAACTTTAATGAAACACTCATCTGTCATTGTGCCTTTCACTGAATTTTCTTTTTGATTTGGGTCTTCAGTTGGAGCTATATGTCTAAAAGGGTCCAATCGAACACATTGCTGAATAGTTTGTTGCTTTCAATTTCATTGTTTGAAATACACTATAAATTATATGATGTTTGCAACAAATTTTCTATGTTACAAATGTAACATTAGTCCATTAATGCATTTTATTTTTTTGTTCTATATAAAATGTTTTAGCACCCAAGGTTTTCAGGTGACTTCCTTCAAATGGTGCTGTTTTAGCTCAACAGATTGTATCTTGAAAACAACAAATTGTCAATAAA

Function

symbol description
calua Predicted to enable calcium ion binding activity. Predicted to be located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and melanosome. Predicted to be active in endoplasmic reticulum. Is expressed in chordo neural hinge; floor plate; hypochord; notochord; and skeletal system. Orthologous to human CALU (calumenin).
calu Enables calcium ion binding activity. Located in endoplasmic reticulum. Biomarker of colorectal carcinoma.

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_04220852_04223533.mRNA True 1983 mRNA 0.37 6 4219833 4223533

Neighbor

gene id symbol gene type direction distance location
CI01000020_04195892_04207990 TNPO3 coding downstream 11662 4195892 ~ 4208171 (-)
CI01000020_04193622_04195369 NA coding downstream 24464 4193439 ~ 4195369 (-)
CI01000020_04177484_04184880 NA coding downstream 34953 4177478 ~ 4184880 (-)
CI01000020_04163168_04174402 PNPLA8 coding downstream 45156 4162232 ~ 4174677 (-)
CI01000020_04105843_04123658 NRCAMA coding downstream 96175 4105722 ~ 4123658 (-)
CI01000020_04318813_04320384 DYRK2 coding upstream 94020 4317553 ~ 4320936 (-)
CI01000020_04346950_04352611 NA coding upstream 123280 4346813 ~ 4352611 (-)
CI01000020_04355618_04370211 CAND1 coding upstream 131228 4354761 ~ 4370211 (-)
CI01000020_04429666_04431268 NA coding upstream 205974 4429507 ~ 4431838 (-)
CI01000020_04554143_04568636 NA coding upstream 330278 4553811 ~ 4568756 (-)
G113525 NA non-coding downstream 9175 4210440 ~ 4210658 (-)
G113522 NA non-coding downstream 10115 4209394 ~ 4209718 (-)
G113382 NA non-coding downstream 409576 3805725 ~ 3810257 (-)
G113372 NA non-coding downstream 461634 3757860 ~ 3758199 (-)
G113357 NA non-coding downstream 515712 3703848 ~ 3704121 (-)
G113550 NA non-coding upstream 49184 4272717 ~ 4272920 (-)
G113581 NA non-coding upstream 157492 4381025 ~ 4381293 (-)
G113612 NA non-coding upstream 195602 4419135 ~ 4467635 (-)
G113729 NA non-coding upstream 377859 4601392 ~ 4601835 (-)
G113789 NA non-coding upstream 449423 4672956 ~ 4673336 (-)
G113375 NA other downstream 371909 3761445 ~ 3847924 (-)
CI01000020_03304491_03309596 UBE2H other downstream 885271 3300912 ~ 3310248 (-)
CI01000020_02828968_02849511 NA other downstream 1370315 2828763 ~ 2849518 (-)
CI01000020_02121873_02122329 KISS2 other downstream 2097459 2121714 ~ 2122619 (-)
G112136 NA other downstream 2098601 2040034 ~ 2121232 (-)
G113802 NA other upstream 520986 4744519 ~ 4746050 (-)
G114747 NA other upstream 1301073 5524606 ~ 5525234 (-)
CI01000020_05958448_05959900 NA other upstream 1734918 5958221 ~ 5960015 (-)
G114926 NA other upstream 1935777 6159310 ~ 6162609 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027190 calua coding NC_007115.7 CM002888.2 13568469 ~ 13576215 (+)