CI01000020_04240295_04242117


Basic Information

Item Value
gene id CI01000020_04240295_04242117
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4240191 ~ 4242373 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_04240295_04242117.mRNA
ATATAAAAGCTCTAGAGTCACAACATGCACTCCAAATCTCGTCTACGAGGAACATCAGTCTACATAAGAGGACATATCATTGAATCCACCCGTCTACCTGCAATATGAAGTTCCTAACTCTGCTTGCTGTGATGTGCTGCTGGTGCTTTCTGTGCGGCCAGGCGATGCACCTCATGCGCCCGCGCCCCAAGCCATTGGACAGCCCCGTCACCTGGAACAACCTCTATGTGATGACTGAACATGAAGAGGGCACTTGTTGCATCAACACCATGATTTTGGATTACTATCTAAAGCACATCTTGCATGCAGATGATCACGTTGATAAATACCCACAAATTCGTTTTGTGAGGTCTGATCTGCACAGGCTCGCACAAGATTTGAAACCGTACTGTAGCAACAGTGCAGAACATGCGCAGGTCAAGAAATACAAGGACAGATATAGTGCCTATGAACGTAAAAGTTTGACACTTGAAGCTCGTAACAAAGCAGTCGGAGAGACGATTATTCTCTTCCACTACCTTTTTGAATCCTGCTCTGCAAGAATGTGACTCTGAAACTCTCCCCAGCAGTATTGATATATTTTTTTTTTTCAATCTTCAAAGGATTATTTATTATGGACTTATTTATTTTAGATATTTATTGTATGTTATATGAACTTTTACAAATGGCATGGGAACTGTGCTTTCATGCTATGTGTTGTAAGGTCACACCTGTGACTGCTGTTGTGACTGTCTTGGACTACATCCTAAGACAGACCACTGCAAAGTAAATGCATTGTAAAAGCATTATTAACTCAAGTTTTCA

Function

NR:

description
IL-22

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_04240295_04242117.mRNA True 804 mRNA 0.42 4 4240191 4242373

Neighbor

gene id symbol gene type direction distance location
CI01000020_04226010_04238699 MDM1 coding upstream 1268 4225042 ~ 4238923 (+)
CI01000020_04213624_04215676 OPN1SW, OPN1SW1 coding upstream 23698 4213529 ~ 4216493 (+)
CI01000020_04186824_04192668 IRF5 coding upstream 47311 4186418 ~ 4192880 (+)
CI01000020_04175433_04175851 AKAP14 coding upstream 64340 4175397 ~ 4175851 (+)
CI01000020_04005946_04011338 NA coding upstream 228708 4005739 ~ 4011483 (+)
CI01000020_04266512_04267515 NA coding downstream 24023 4266396 ~ 4267780 (+)
CI01000020_04273916_04275725 IFNG1-2 coding downstream 31365 4273738 ~ 4276107 (+)
CI01000020_04279888_04282279 NA coding downstream 37398 4279771 ~ 4282547 (+)
CI01000020_04446676_04465745 NA coding downstream 201873 4444246 ~ 4466188 (+)
CI01000020_04496296_04500632 NA coding downstream 253748 4496121 ~ 4501039 (+)
G112935 NA non-coding upstream 16667 4222665 ~ 4223524 (+)
G112984 NA non-coding upstream 27270 4212678 ~ 4212921 (+)
G112982 NA non-coding upstream 29290 4210666 ~ 4210901 (+)
G112980 NA non-coding upstream 30102 4209627 ~ 4210089 (+)
G112915 NA non-coding upstream 68662 4170645 ~ 4171529 (+)
G113063 NA non-coding downstream 129518 4371891 ~ 4372234 (+)
G113065 NA non-coding downstream 138648 4381021 ~ 4381313 (+)
G113067 NA non-coding downstream 160810 4403183 ~ 4408822 (+)
G113048 NA non-coding downstream 167139 4409512 ~ 4415205 (+)
G113060 NA non-coding downstream 342695 4585068 ~ 4591113 (+)
G112753 NA other upstream 506605 3714381 ~ 3733586 (+)
G112679 NA other upstream 936461 3301171 ~ 3303730 (+)
G111183 NA other upstream 1581278 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 1790384 2443278 ~ 2444944 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 2861842 1373164 ~ 1379068 (+)
G113050 NA other downstream 184285 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 517639 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 564654 4806765 ~ 4809414 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 1024664 5267250 ~ 5268673 (+)
G113929 NA other downstream 1380334 5622707 ~ 5625232 (+)

Expression


Co-expression Network