CI01000020_04279888_04282279


Basic Information

Item Value
gene id CI01000020_04279888_04282279
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4279771 ~ 4282547 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_04279888_04282279.mRNA
GAATAAATACAAAGGTGAGGACCGGAGTGAAGGCAAAAGAAGGAAGAAAAGAATGAGACAGGTGTATCAGCAGGACCTCCATTGAGAAACATTAATTTAGTCACTTAGGGACAGAATATGGCCAGTGCTTTGCAGTATTTTGTTATGATCCTTATCCTTGGCATTCCGATACACGAGGGCAAGGTGGTAATCCAAAACGGCAAGTGCATCGATGTTAGAAGTCCTTGTTTCGATCTGAACATATTGGCGAATATGGCTGAGCGTGTCAGCAAAGATGTGGTAGCTGCAGATGGTGAGAAGATCCTCCTGAAGCACAAGTCCTTTGACAAAATACGGAAAAAGAAAAATCTTCACAGCTGTGTCCTGCAGAAAATCATCGACCTATTTCAAAATGTTCTCGAAGTGACAGAGAATGAGTCATCTATCCATCATGAAGAAAATATGAACTACCATCGTGAGCTTATACACATTATGGAACAACTCAAAAACTGTGTTCATCAGATTCCGGAGAAAAAAATGAGCCTAGATGAGCTTGCTGTCTTACAGCTACAAAAACTGAAGAATGCCAGTGATAGTCTCAATGATGTGCGTATCCAGGAGAGGGTCATGGATGAGCTAAAAACCCTCCATCTCTACATCCGAGGAAAAGGCTTCCGTAAAAATATGAACGACAAAGAAGAGGCATGATGTTCCATTAATTCCAGCCTACAATGTGTTGTCACATCTCTGCCTGATCACTTTAAGACGTGACAGTTTAAGCAGGGACAGAATAACAAGCTATCTCTTCTAAATGAGACCGAATTTGTATGCCTGACCTTTTGTTTCTAATATGGTATTTTAGTTGTTAATGCTTTTAGTGCAATTATATTTTTTGCTTTTTTTGTAAAGTAATGAATATTTAAATAGTATATGCATATTGCTTATGTACTTTCGGTGAAAGATTGAGTGTACTGCA

Function

NR:

description
hypothetical protein cypCar_00017693

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_04279888_04282279.mRNA True 955 mRNA 0.39 5 4279771 4282547

Neighbor

gene id symbol gene type direction distance location
CI01000020_04273916_04275725 IFNG1-2 coding upstream 3664 4273738 ~ 4276107 (+)
CI01000020_04266512_04267515 NA coding upstream 11991 4266396 ~ 4267780 (+)
CI01000020_04240295_04242117 NA coding upstream 37398 4240191 ~ 4242373 (+)
CI01000020_04226010_04238699 MDM1 coding upstream 40848 4225042 ~ 4238923 (+)
CI01000020_04213624_04215676 OPN1SW, OPN1SW1 coding upstream 63278 4213529 ~ 4216493 (+)
CI01000020_04446676_04465745 NA coding downstream 161699 4444246 ~ 4466188 (+)
CI01000020_04496296_04500632 NA coding downstream 213574 4496121 ~ 4501039 (+)
CI01000020_04540238_04552388 NA coding downstream 256651 4539198 ~ 4552553 (+)
CI01000020_04593462_04636463 NA coding downstream 310915 4593462 ~ 4636472 (+)
CI01000020_04646413_04669776 GRIP1 coding downstream 363537 4646084 ~ 4670074 (+)
G112935 NA non-coding upstream 56247 4222665 ~ 4223524 (+)
G112984 NA non-coding upstream 66850 4212678 ~ 4212921 (+)
G112982 NA non-coding upstream 68870 4210666 ~ 4210901 (+)
G112980 NA non-coding upstream 69682 4209627 ~ 4210089 (+)
G112915 NA non-coding upstream 108242 4170645 ~ 4171529 (+)
G113063 NA non-coding downstream 89344 4371891 ~ 4372234 (+)
G113065 NA non-coding downstream 98474 4381021 ~ 4381313 (+)
G113067 NA non-coding downstream 120636 4403183 ~ 4408822 (+)
G113048 NA non-coding downstream 126965 4409512 ~ 4415205 (+)
G113060 NA non-coding downstream 302521 4585068 ~ 4591113 (+)
G112753 NA other upstream 546185 3714381 ~ 3733586 (+)
G112679 NA other upstream 976041 3301171 ~ 3303730 (+)
G111183 NA other upstream 1620858 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 1829964 2443278 ~ 2444944 (+)
CI01000020_01375811_01378288 AVPR2L other upstream 2901422 1373164 ~ 1379068 (+)
G113050 NA other downstream 144111 4426658 ~ 4439762 (+)
CI01000020_04760482_04774849 NA other downstream 477465 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 524480 4806765 ~ 4809414 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 984490 5267250 ~ 5268673 (+)
G113929 NA other downstream 1340160 5622707 ~ 5625232 (+)

Expression


Co-expression Network