CI01000020_04540238_04552388


Basic Information

Item Value
gene id CI01000020_04540238_04552388
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4539198 ~ 4552553 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_04540238_04552388.mRNA
CTATAAAAGTTACAGTATTATGATGTTTTGGTACTAATCCCATGTTTTTCTTTTTCTCTCCCTCTCTTGCTACCATTGCTGCCTCTGCGCCATTTAGGTAAGTCTCTTTAATATTTAAAGTATATCATTGTCTGTCACTCTTGTGAATCAATGAGAGCCCTGTCTTTTTCATGATGACCTGATGACATCAACCACAAAAGACTCAATATTTACAGGCAGTTAAAGGTTACAAGGTCACGCTGATGTTAGTGGTTTGATGGATGACATCAGAGCATGTGTGTTTCATTTTAAAAGGACAGCTCACTCAAAATTATCATCATTTACTCACCCTCATGTCATTCCAAACCTGTATGACTTTCTTCCGTAAAGAAAAACTTTTTGAAAAATCTGTTTTTGTCCATATAGTAGACGTCTGTAGGGTCTATTGTTGTATTGGACCTCACTGACTTTCATTGTATGAATAAAAATGGGTTAAAAACACTTTTTGAAATGCCATATTTAATGTTTCAAAGAAGAAAGAATGTCATACAGGTTTGGAATGTCATGAGGGTGAGTTAAATTATGACAATTTTCATTCTTAGGGGGAACTATCCCTAAGAGTCTCGTTGTGTGCAAGACAAAGCTTTTAGGGAGTGTTTTGTACTTTCGATCTGCTAGAAATAGTCCCGTCACTCTAATTTGGTGTATGCAAATCTGAACTTTTTAAATGTGACCTATTTAATTTTGGTTTGGAATAAATTTATATGAGAATATTATTTGCACCTTCATGGCTTTCTATTTTGATATTTATTCTAAAATATTTATTTACTTATTTTTAATCCATTTTGACAAAGGATGTCTAAATCTCCGAAATGCCTTCTGGAGCGTCTTTCAGGAGGCACTGTGAAGTCTGAAATCATTTGATGTGGAGCTGGCTGGGGCTTAATAAGATCTGGGGGTTGGGAAAGAAGAGGCGTGCATAGCAGCCCTGAAAATAACCGCTTCCCCCTCGCACAGGAAGTGCTTATCAGCATATCCCATGGGGGTAGCAGGGCTGCATAATGCCAGTCTTACTCTCTGCTTGGCTTCCCCTGTCAAAGCCTTATGGCATTAAGGAGCAACCAAGCCAGAGCTCACGGCTAGAATCGGAGGCAGAATGCGACGGCTGCTGCACAGCTGGGCCGGGGTCCCGCTCTCCTGGAGACCCTGCCACACTGAGGAGGAACCAGCAGGTGCAGGAGAGGAAGGAGAGGAAGGTGTCAATCAAGATTCTTCCAGCAGAATGTTGTGCCCTGGCACTAAGTACACATCGTTTCAAGCTTCTCCCACAAACATGTTTGTTTACTCTAATAGCCCACATAGCCCCAGATTTCAGTCCAGTCGAGTGGGAGGATGTGCAAAAGGATGTACACTGTTTACTATTTACTCCTTATCCGGGAGAACCATTAACAGAATTCATCTTCCAAGACCTCCTAGTCAGCAGGAATGTTTCACACACACGTGTGGTCCCTATAATTGAGATTGAGGTAGACATCATGGACCTTGAGAATATTGATTTGTCCATGAGCATGGATTTTATATACAGCAAGCAGTTTGGCTGTTATCTCAGACTATTCTTACAAGCGTCAGGGGAGGAACAGAGTATAGTGGCGATGACCTTAATACTTTCATTTATGTTAAAGACTCATTCAGGCCTGTTTCATACACAAACAGAGACAGACCTCTTTAATACCCAGTCCCTTGTCGCTAGGCTTATCGTGCCTCCAAATGTCTGATAATGCGAAGAGATACCGCCACTGACCTAAATGCATGTTATCTGTGTTATAAAAAGGTCTGCTGCTCAGCATTGAGCACATCAGCACTGCTCTGTGAATCACACCAGTACACTTTTGATTGGAATTAGGGGTGTATGATTGGCATTACGCAAATTTAAAAAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_04540238_04552388.mRNA True 1919 mRNA 0.41 6 4539198 4552553

Neighbor

gene id symbol gene type direction distance location
CI01000020_04496296_04500632 NA coding upstream 38159 4496121 ~ 4501039 (+)
CI01000020_04446676_04465745 NA coding upstream 73010 4444246 ~ 4466188 (+)
CI01000020_04279888_04282279 NA coding upstream 256651 4279771 ~ 4282547 (+)
CI01000020_04273916_04275725 IFNG1-2 coding upstream 263091 4273738 ~ 4276107 (+)
CI01000020_04266512_04267515 NA coding upstream 271418 4266396 ~ 4267780 (+)
CI01000020_04593462_04636463 NA coding downstream 40909 4593462 ~ 4636472 (+)
CI01000020_04646413_04669776 GRIP1 coding downstream 93531 4646084 ~ 4670074 (+)
CI01000020_04679937_04682501 TMBIM4 coding downstream 127282 4679835 ~ 4683082 (+)
CI01000020_04713721_04722425 LEMD3 coding downstream 161168 4713721 ~ 4723717 (+)
CI01000020_04733481_04740265 MSRB3 coding downstream 180928 4733481 ~ 4740265 (+)
G113048 NA non-coding upstream 123993 4409512 ~ 4415205 (+)
G113067 NA non-coding upstream 130376 4403183 ~ 4408822 (+)
G113065 NA non-coding upstream 157885 4381021 ~ 4381313 (+)
G113063 NA non-coding upstream 166964 4371891 ~ 4372234 (+)
G112935 NA non-coding upstream 315674 4222665 ~ 4223524 (+)
G113060 NA non-coding downstream 32515 4585068 ~ 4591113 (+)
G113069 NA non-coding downstream 127736 4680289 ~ 4680672 (+)
G113057 NA non-coding downstream 141302 4693855 ~ 4701724 (+)
G113088 NA non-coding downstream 253280 4805833 ~ 4806053 (+)
G113098 NA non-coding downstream 349539 4902092 ~ 4902684 (+)
G113050 NA other upstream 99436 4426658 ~ 4439762 (+)
G112753 NA other upstream 805612 3714381 ~ 3733586 (+)
G112679 NA other upstream 1235468 3301171 ~ 3303730 (+)
G111183 NA other upstream 1880285 2647511 ~ 2658913 (+)
CI01000020_02444149_02444833 NA other upstream 2089391 2443278 ~ 2444944 (+)
CI01000020_04760482_04774849 NA other downstream 207459 4760012 ~ 4776083 (+)
CI01000020_04807118_04808453 NA other downstream 254474 4806765 ~ 4809414 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 714484 5267250 ~ 5268673 (+)
G113929 NA other downstream 1070154 5622707 ~ 5625232 (+)
G114094 NA other downstream 1250499 5803052 ~ 5805718 (+)

Expression


Co-expression Network