CI01000020_04819543_04826613


Basic Information

Item Value
gene id CI01000020_04819543_04826613
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4819543 ~ 4826782 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_04819543_04826613.mRNA
TGTCATTTATCATGGCCGGTAATAAGACGCGCCGGGTCGAGGGCCGTTTCCACCTTTGTGATCCCTGGTGGAAGCTATCCCTCCTACAGCCTCCGCACCGATCTGAGTTCAGAGGACCAGTCACTGGTGTTTCTTTTTCTTAAAGAGTGTGGGGCAGAGCCTGTATTTGTTACTGAGTTCAAGAATTGGTTGCCCAGTGACAGAAATGTGGAGCTTGTCGATGTGCTGGACGTCCTGCAGGAGTTTGAAGATTCGTCACCTAAGAATAAAGCTGTCGCTGAACAGCTCAAGTCAAGTGTCAAAAACTCAGTCGCTTGGATGCACGTGACCGTTGCCAGCATGTACCCTCAGATCATGAAATACTTGCCAACATTGCTGCCAGGCCAGTTTATGGATATAATAAGCAACGGAAAGATGAAAAACACAGAGGAAAACACTGAAGAAACTCCACAGCAGCAGATTAACACAAGGTTATTGGCTAATCTGGAGGAGTTAATCAAGACTGATGTTTGGAAGTTGGGCTTCAACTATATCATGTTTAAAGAGTTCCACATGATCAGATGTGAAGCAAAACTAGAGGCCTTCAAGTGCTTCAAGTACTTGTTTAGAAGAATCCCTGAGGTACAGCAAAATGCCTTACTATTGTATGCAGAACTGAAAGAATACTGCAGAAAGACTGGCAGCACGTACATTGAACATAAGATGCTGCTGGAGAAGTGGAAAAATACATTTGAGGGGGCCATGTTCCTTCAGGAGCAGGGGGTGCTGGTGAAGAAGAACAACAAGGTGTCACTTCACAACCACTTCACCTACGAAAAAGGCATTGCAGAATGCTTGAGGGTCCTGGTTGAGGGAGAACCCTGGAAAATCCACTTGGATGTGAGAAAGGTTCTTCGAAGAGCTGCGATGGAGAGATTATGGGGGAAGGCTTGTGATGCAAGAACATCGGCCTCTGAAAAAAAGGACTTGCAGCAAGAAGAAGATGAAGCTCAGCCTGGTTCCTCAAGCATGGACCACAATGGAACATATTCTGACTCAAATGACCCCACCTATTCAGACATTGATTCCTCTACTATAGAGTTGGACCACGATCAGGTGCAAGCAGCAGAAATGATGTGCGACAACCCAGTGACAGTGATCAGTGGGAAGGGTGGTTGTGGGAAAACCACAGTAGTCAGCCTGGTGTTTAAGGCGGCCATGCAGAAACAGACCAGCAACAGAGACATTGAAGACAAGCCTCCTGTGGAGGTTCTCCTCACTGCTCCTACAGGGAGAGCTTCTTCACTTCTTACTAAAAGAACCGGTTTCACTGCTTATACTATGCACCAGATTTTGTGGAGTTTCAAAAAAGCAAAAACAGATCCCAGTGGACATCCTCAGGATTGGAAGTTCTCCCAGGTGCGGGTGCTGGTTGTCGATGAAGGGAGCCTGGTGTCTGTTCAGATCCTTCACTCCGTTCTCAGCATGCTTACCAAACATGCAAAACTCCAGAAGTTCATCATTTTGGGAGATGTGAGGCAGCTGCCCAGCATTGAGCCTGGAAACACATTGTACGATCTGTTTGAAGGCCTCAAGGATGTCCGTTGGGCCATTGAGATGAAGACCAACCATCGTGCCGAGTCTGAGCTCATCGTCAGAAACGCTGGACTCATCTCAGAGATGGGTAAGAAAAGGCGTTACAGCCCTCTGGAGTTTGATGCCACCATAAATATGACAAATCCCTCCACAGTGCCATCTGACAGAAGGTTCATTTTTGTCAAAATCAGTGATAAAAAGGATGCTCTCCAGGAAGCCATTCAGTTCTTACTCATTGACGCTCCTGGGCTCGAAGACCATAAATCATCACAGATTGTGGCATTTATGAGGAAGGACTGCCAGTTGATCAATGAGCTTTGCTGCAACCATTATTCGGACCATGATATGAAGACTTGCGAAAATAAAATGTGCTTTCAAGTGGGAGATAAAGTTTGCTGTGCAAAGAATGGCTACATCTCTGGCAAAGATGAAGAGAAAAAGCTAGAAGATCCTGCCCGTGTTACTGCTGGAACTTCCTGTTTAAATGGTGGAGCTTTCCAAGATATTCCTAGAAGCCAAAGAAAAAATGAACAGATGACAGTGAAAAAAGAAAGAATGTGCAATGGTGAAATTTTCTTCATTAAAAAGGATGTGACTGAGATAGATGCAAGAAGCAAAACAACACGCTACCTGACACTAGATGATGAAAACGGGCATGTGGTAACTTCTAACTACAGCGAGCTACAGCGAGAATGTAAATTGCGTCATGCTTGGGCAAGAACCATTCACACCTTTCAGGGCTCAGAGGCTGAAACTATTGTGTACGTTCTCAGAAATAGCTTTGCTGAAAACTGGCAGCATGTATACACTGCAGTGACACGCGGTCAGAAGCGTGTGTATGTGGTGGGTACAAAGCGTGACCTAGAAGGAGCCATCAAGAAAAGGATCCCCCCTCGAAACACACGATTGTGTGGCCTTCTCAAGGCGATAGTTGCCCAACAAGGTCCTGAAGCCTCAAAGCGGCATGCTGAATCAGACCCATGCACTACACCGAGCAAACTTGTAAAAGAAACAGAGTAAAAAATCTGTAAATTATCAAAAATACATATTGCTTGTAACTTTCTATGGCCTACTCTTTCTACTCTAACAAACCACTTCGGAAGAGTCTGCGCTAGCTCAAGCCCCAAATCTCACAGCAAGGAGCTTCCCTGAGAAAATTCATTTTCATATCTCAACTTGATTTACTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_04819543_04826613.mRNA True 2764 mRNA 0.45 12 4819543 4826782

Neighbor

gene id symbol gene type direction distance location
CI01000020_04818050_04818245 NA coding upstream 1298 4817199 ~ 4818245 (+)
CI01000020_04813284_04816943 IRAK3 coding upstream 2440 4813284 ~ 4817103 (+)
CI01000020_04807118_04808453 NA coding upstream 10694 4806765 ~ 4809414 (+)
CI01000020_04760482_04774849 NA coding upstream 43460 4760012 ~ 4776083 (+)
CI01000020_04733481_04740265 MSRB3 coding upstream 79278 4733481 ~ 4740265 (+)
CI01000020_04827882_04835758 NA coding downstream 469 4827251 ~ 4836019 (+)
CI01000020_04837068_04844947 DERA coding downstream 10286 4837068 ~ 4845982 (+)
CI01000020_04868249_04868956 MGST1.2 coding downstream 40522 4867304 ~ 4869071 (+)
CI01000020_04870746_04871405 MGST1.1, MGST1 coding downstream 43565 4870347 ~ 4871868 (+)
CI01000020_04900806_04906259 NA coding downstream 73375 4900157 ~ 4907594 (+)
G113088 NA non-coding upstream 13490 4805833 ~ 4806053 (+)
G113057 NA non-coding upstream 117819 4693855 ~ 4701724 (+)
G113069 NA non-coding upstream 138871 4680289 ~ 4680672 (+)
G113060 NA non-coding upstream 228430 4585068 ~ 4591113 (+)
G113048 NA non-coding upstream 404338 4409512 ~ 4415205 (+)
G113098 NA non-coding downstream 75310 4902092 ~ 4902684 (+)
G113099 NA non-coding downstream 76048 4902830 ~ 4903283 (+)
G113102 NA non-coding downstream 87239 4914021 ~ 4914271 (+)
G113058 NA non-coding downstream 113629 4940411 ~ 4943891 (+)
CI01000020_05038237_05069897 NA non-coding downstream 229548 5037139 ~ 5070313 (+)
G113050 NA other upstream 379781 4426658 ~ 4439762 (+)
G112753 NA other upstream 1085957 3714381 ~ 3733586 (+)
G112679 NA other upstream 1515813 3301171 ~ 3303730 (+)
G111183 NA other upstream 2160630 2647511 ~ 2658913 (+)
CI01000020_05267250_05267668 MRPS33 other downstream 440255 5267250 ~ 5268673 (+)
G113929 NA other downstream 795925 5622707 ~ 5625232 (+)
G114094 NA other downstream 976270 5803052 ~ 5805718 (+)
CI01000020_05960777_05981596 NA other downstream 1152979 5960777 ~ 5982298 (+)
G114382 NA other downstream 1765442 6592224 ~ 6593564 (+)

Expression


Co-expression Network