CI01000020_05636849_05648400


Basic Information

Item Value
gene id CI01000020_05636849_05648400
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 5635351 ~ 5648422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_05636849_05648400.mRNA
CTTTAAAAACATATAATGAAATAAAGTCTGCCCACAGTTAATAAAGACTTTAAAATAATACACCCCCATATCTGTTATTAAATAAATGCATGAGGATGAGTCAAGGTCTGACAGCTTCCAAAGCAACTTCACCGCACATTAACTTAAATATTATCAAATTAAATTATATACACCTGTATATAAATTATTAACATACAATAAAAAAAAATCTTTGATCAAAAAAATATATTCAGTTTAATATTTAATTTGCAGCATTCTGGGTCAGACAGCTCTAATAACAGCTAAAGTATATAACTGACTATTGTCCCAGACAGCTGATTTCCTATGTAGTTGTGCTTGTTTTGTCTCTTGTATTACTGATGCATGATTCAGGATTATTCCTCTGATACAACTTTCTTTTCTTGTATATTTAAGATGAAAATTTCAATATTCCAGTGTATTTCCTTGCACTACCATCCAAAATTTGGGGTCAGTAAGTTTTTATTTTTATTTTTTTATAAATACTTTTATTCAACAAGGAGGACATGTTTAATTAATCAAAAGTGAGAGTAAAGTCATAATAGTTTTCACAAAAATATTAAGCAATACAACTGTTTTCAATATTAATAATGTAAGAAATGTTTCTTGAGCAGCACCAAATCTGTATATTAGAATGATTTCTGAATGATCATGTGACACTGAAGACTGGATTAATGATGCTGAAAATTCAGCTTTGCATCACAGGGATAAAATTCAATTTTAAAATTAATAAAAATATAATTTTATAAAATAGTATTGTTATAATATTTCACACTATTACTGTTTTTACTGTATTTGTGATCAATTAAATAAAATCTTAGAATGTTCAAAAACATTTAAAAAAAATCTTACCAACTAAACTTTTGAACAGTAGTGTATTTATTTGGCAAGTAGTCATATAATAATGTATGTAATGTAGTGTTGGTGAAAACATTTTCCAAGAATGATTTCAGAGTGATTTGAGAATTACAGGATGTTACCACATTTTGAAGCATTGGATAACGAAAAGCTCTTTTCTTTAGAATATCGTGCTGACGCATGATTCAGGATAATTGTTTCAATGTTGCTAAAATGAACAACCCAATGGTAATACCATATTTGACTTCATTTCTGAGGACCTAAAATGATTTAATCATAATCCTGTAGAATAGCTGATAACTGTGAGAATTTTTCACAGGCTTTTTAGAAAAGATTCAGCAGGGCTGTCCCATTATCATAGCTGAAAAAAGCAGCGGCTGTTCTGAAAAAGGAACCCTGGGTATCTTTGCAAACATGACCTCGCTGAGACAGTTGTTACCAGTCCCCAAATAAGGGCCCAGCCAACAATGAGGGGCAGTGCATTTGTGAGTAAAAGAGGACATGAAGAATAGAGACTAAAGGAAAGGGCACGTGGGTGAAAGACAGCAGAAACTGAGTGTCTTAGTGTGAGTTAGAGAGATCAGGGCTTAGTGACGCTCTCTCTGTATCAGTTCTGCAGACGATGATGCAGCGTCAAGGCAGACAGAGCTACACCAGGCTTGGTGTGTGGCCATCTTTGAGACGAGGAAGTTCTTTCATCTTCCTGACACCTGGACCCCAGTGGGACTTTACGCTGTTTCGTGAAGTGGTTTCTTTTGGGAAAAGTCCAGTAAAGAGAACACAGGCCAATAACAGAGACCCTGCTCTCTGTGGCCACTGCAGTGCTGCAGAAATGTTTACAACTCCTTCACACCCTGCACACACTCCACAGAAACGCAAGCGCAGAGAGAAGGACGACAAGGACGATGCAGTCAGTCTCTGCAGCTTTGACTTCAAGAAAAAAGTCATGAAGTTTGGAACATCACACGGGTGTTACTAAATACCCCTCAAACATTACTACA

Function

NR:

description
novel protein similar to vertebrate neuroepithelial cell transforming gene 1 (NET1)

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_05636849_05648400.mRNA True 1877 mRNA 0.35 5 5635351 5648422

Neighbor

gene id symbol gene type direction distance location
CI01000020_05569133_05573180 NA coding upstream 61544 5568383 ~ 5573807 (+)
CI01000020_05536783_05538245 NA coding upstream 96965 5536783 ~ 5538386 (+)
CI01000020_05514885_05515490 NA coding upstream 119656 5514885 ~ 5515695 (+)
CI01000020_05490931_05500137 NA coding upstream 135214 5490931 ~ 5500137 (+)
CI01000020_05475873_05481460 CYB5R3 coding upstream 153891 5475873 ~ 5481460 (+)
CI01000020_05651021_05656758 NET1 coding downstream 2357 5650779 ~ 5656904 (+)
CI01000020_05816151_05820574 NA coding downstream 167241 5815663 ~ 5820886 (+)
CI01000020_05941404_05941840 NA coding downstream 292982 5941404 ~ 5941885 (+)
CI01000020_05942995_05951650 PRMT8B, PRMT8 coding downstream 293504 5941926 ~ 5952403 (+)
CI01000020_05960777_05981596 NA coding downstream 312355 5960777 ~ 5982298 (+)
G113924 NA non-coding upstream 7728 5625923 ~ 5627623 (+)
G113932 NA non-coding upstream 12745 5566392 ~ 5622606 (+)
G113941 NA non-coding upstream 16402 5615303 ~ 5618949 (+)
G113953 NA non-coding upstream 128835 5503964 ~ 5506516 (+)
G114060 NA non-coding downstream 20227 5668649 ~ 5668857 (+)
G114070 NA non-coding downstream 62221 5710643 ~ 5710910 (+)
G113915 NA non-coding downstream 67241 5715663 ~ 5717142 (+)
G114084 NA non-coding downstream 134635 5783057 ~ 5783281 (+)
G114085 NA non-coding downstream 135094 5783516 ~ 5783743 (+)
G113929 NA other upstream 10119 5622707 ~ 5625232 (+)
CI01000020_05267250_05267668 MRPS33 other upstream 366678 5267250 ~ 5268673 (+)
CI01000020_04807118_04808453 NA other upstream 811565 4806765 ~ 4809414 (+)
CI01000020_04760482_04774849 NA other upstream 842090 4760012 ~ 4776083 (+)
G113050 NA other upstream 1195589 4426658 ~ 4439762 (+)
G114094 NA other downstream 154630 5803052 ~ 5805718 (+)
G114382 NA other downstream 943802 6592224 ~ 6593564 (+)
G114389 NA other downstream 949924 6598346 ~ 6600180 (+)
G114388 NA other downstream 975845 6617328 ~ 6644816 (+)

Expression


Co-expression Network