CI01000020_06906111_06910886 (TSPAN9A, TSPAN9B, TSPAN9, TSN9)


Basic Information

Item Value
gene id CI01000020_06906111_06910886
gene name TSPAN9A, TSPAN9B, TSPAN9, TSN9
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6906111 ~ 6910979 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000020_06906111_06910886.mRNA
TTGTCGGGCTGTGGGTTGTTAGGTGTTGGCATCTGGCTGTCCGTTTCTCAGGGCAGTTTTGCCACATTCTCCCCCTCCTTCCCCTCCCTCTCAGCTGCCAATCTGGTCATTACCTTGGGCTCCGTCGTCATGGTAACGGGCTTCCTGGGTTGCCTCGGTGCCATCAAGGAGAACAAGTGCCTGTTGCTAAGTTTCTTCATTGTTCTGTTAATTATTCTGCTGGCAGAGCTGATTTTGCTCATCCTTTTCTTCGTGTACACTGACAAGGTGAGCGAGAACGCTAAACAGGATCTTAAAGATGGCCTGCGGCTCTACAACACGGACAATAACGTCGGCCTCCGCAACGCCTGGAACATTATCCAAGCTGAGTGGGAGTGTTGTGGTGTAACTGGACATACAGACTGGCATGATGCCCTGCAGGAGAAAACGGTGCCAGACAGATGCTGCCAGGAGCACTACAGAGAGTGCGGTCGCAACGCCACTAACACCTTCTGGTCACAGGGCTGCTACGAGAAGGTTGAGGAATGGCTGAACGACAACAAACATTTGCTTGGAACCATCGCGATGTGTGTGCTGGTCTTACAGCTGCTTGGGATGGCCTTCTCCATGACCTTATACCAGCAGATCCACAGGGCGGGAAAGAAGTACGATGCCTAGAGGAAGCCCAGTGTTACACTACAAAAACTCTTTGAACACCTTATGTATTATTTCAAAGCCCCGTTTCATGCCATCACAAACTATTACCACTGA

Function

symbol description
tspan9a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN9 (tetraspanin 9).
tspan9b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN9 (tetraspanin 9).
tspan9 Located in tetraspanin-enriched microdomain.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17350 TSPAN9; tetraspanin-9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000020_06906111_06910886.mRNA True 750 mRNA 0.51 6 6906111 6910979

Neighbor

gene id symbol gene type direction distance location
CI01000020_06860988_06887829 MICAL3B coding upstream 18077 6860988 ~ 6888034 (+)
CI01000020_06852155_06857778 SVOPL coding upstream 48326 6852155 ~ 6857785 (+)
CI01000020_06833378_06846518 NA coding upstream 59335 6833342 ~ 6846776 (+)
CI01000020_06819838_06824266 PARP12B coding upstream 81442 6819838 ~ 6824669 (+)
CI01000020_06809322_06816591 NA coding upstream 89520 6809322 ~ 6816591 (+)
CI01000020_06927376_06933108 DMTF1 coding downstream 15711 6926690 ~ 6933416 (+)
CI01000020_06944393_06947480 ARL1 coding downstream 33345 6944324 ~ 6947480 (+)
CI01000020_06992285_07002537 NA coding downstream 81306 6992285 ~ 7002547 (+)
CI01000020_07014667_07020555 FOXM1 coding downstream 103688 7014667 ~ 7020990 (+)
CI01000020_07029337_07034375 PGM3 coding downstream 118358 7029337 ~ 7034438 (+)
G114505 NA non-coding upstream 95192 6810647 ~ 6810919 (+)
G114501 NA non-coding upstream 126188 6779718 ~ 6779923 (+)
G114500 NA non-coding upstream 126597 6778999 ~ 6779514 (+)
G114499 NA non-coding upstream 127130 6778779 ~ 6778981 (+)
G114494 NA non-coding upstream 146277 6759601 ~ 6759834 (+)
G114436 NA non-coding downstream 2475 6913454 ~ 6914288 (+)
G114427 NA non-coding downstream 27934 6938913 ~ 6940153 (+)
G114532 NA non-coding downstream 166200 7077179 ~ 7079432 (+)
G114540 NA non-coding downstream 168609 7079588 ~ 7080932 (+)
CI01000020_07089227_07093896 NA non-coding downstream 170435 7081414 ~ 7093978 (+)
G114413 NA other upstream 97393 6803548 ~ 6808718 (+)
CI01000020_06769551_06772924 NA other upstream 132037 6769310 ~ 6774074 (+)
G114388 NA other upstream 261295 6617328 ~ 6644816 (+)
G114389 NA other upstream 305931 6598346 ~ 6600180 (+)
G114382 NA other upstream 312547 6592224 ~ 6593564 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028542 tspan9b coding NC_007115.7 CM002888.2 9696965 ~ 9722568 (-)