G110562


Basic Information

Item Value
gene id G110562
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 30693 ~ 48040 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125641
GTTTATTATGAGATAACATCAGAAAGTGTGCTGATATGAACTGAGCTGCGATGAGGTCAAACACACACACACATGTTTCTGATTTCGACCTGTTTCCTCTGTAAATCATTCATCTGTTTTCTGTCTATTAATCCTCAAGTCTTTCCTCTAAAGAAAGAAAACAACCTCGAATTCATCCACGAATGTGTGAGACGAGATCAAGAGAAACAAATCCAGTCAAGACAGATGTGATCAGATCGATTGATCGATGGATGGATGGACAGAACGATGGATGGATGGATAGATAGACAGGTGTTCCTACCTGTAGGGAGTGTAAGACAGCAGGTGTGTCGTCCGCTCTCAGGAACACTTGCTGTCCACGTAGGTCTCTTCCTCGCTTCCTCTCATGAGCGTTCATGTCATTCCCTCCTGTGTGTCAAAGCTCCGCACAGACCAGCACACACTCACTCGCACACACACACACACACACTCGTGTCGGGTCTCACAGAGGTGTGCGCTCGAGCCCTCAGCAGGGAACACACTGACAGCACACACACACCACAGCCACTCTTCTGTCCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU125641 True 635 TUCP 0.48 3 30693 48040

Neighbor

gene id symbol gene type direction distance location
CI01000020_00108833_00112799 NA coding downstream 60793 108833 ~ 113427 (+)
CI01000020_00126243_00220377 SND1 coding downstream 78203 126243 ~ 221460 (+)
CI01000020_00250359_00289375 SND1 coding downstream 202319 250359 ~ 289375 (+)
CI01000020_00466505_00489442 NA coding downstream 418236 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 453150 501190 ~ 503119 (+)
G110538 NA non-coding downstream 9164 57204 ~ 93449 (+)
G110539 NA non-coding downstream 46709 94749 ~ 95258 (+)
G110554 NA non-coding downstream 48323 96363 ~ 98046 (+)
G110552 NA non-coding downstream 50170 98210 ~ 101064 (+)
G110581 NA non-coding downstream 71121 119161 ~ 137052 (+)
G110589 NA other downstream 132738 180778 ~ 226848 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 762859 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 1020016 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1328329 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2396204 2443278 ~ 2444944 (+)

Expression


Co-expression Network