G110538


Basic Information

Item Value
gene id G110538
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 57204 ~ 93449 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125600
GACACACACACACACACACACACACACACACACACACACACACACACACACGACTCACACATGGACTGATCCGTGACCTTTAAAGTATGATGTGATTCATTTCTGTTTGATTGACATTAAAACAGGAACATGTGGCTAAAATAATTTATAAAGTCTGTAAAAGGGTGAATATTAAACAGAAATCACACACGAGTCGGGACGCCTCTCGCGTTTACACTGATCAAACTCCACACGTGACACCAAAGTCTCTGAACACACTTAAAAAAAAAACCCACACAAATCCATCCCGTCTTTCCAGATCATGTGACCCATGTGAAAACAAGTCCGATAACAGTCTGATATCCCAGAACGTGCGTCTCAGGAGAGAGTGATCCATTAAACCAGTGACAGCGCTGTGAAAGGTCAAAGTGCGTGTGAAACTACTTGAACATCAAACGCTCAGGTACCGGAGGAACGTCAGTGTCTGCAGGGTCCGAACCGGTCCAGATCCGAGCGATCGATCGCCGTCGACGAGACTGTGGCGCCT
>TU125601
GACACACACACACACACACACACACACACACACACACACACACACACACGACTCACACATGGACTGATCCGTGACCTTTAAAGTATGATGTGATTCATTTCTGTTTGATTGACATTAAAACAGGAACATGTGGCTAAAATAATTTATAAAGTCTGTAAAAGGGTGAATATTAAACAGAAATCACACACGAGTCGGGACGCCTCTCGCGTTTACACTGATCAAACTCCACACGTGACACCAAAGTCTCTGAACACACTTAAAAAAAAAACCCACACAAATCCATCCCGTCTTTCCAGATCATGTGACCCATGTGAAAACAAGTCCGATAACAGTCTGATATCCCAGAACGTGCGTCTCAGGAGAGAGTGATCCATTAAACCAGTGACAGCGCTGTGAAAGGTCAAAGTGCGTGTGAAACTACTTGAACATCAAACGCTCAGGTACCGGAGGAACGTCAGTGTCTGCAGGGTCCGAACCGGTCCAGATCCGAGCGATCGATCGCCGTCGACGAGACTGTGGCGCCT
>TU125604
GACACACACACACACACACACACACACACACACACACACACACACACGACTCACACATGGACTGATCCGTGACCTTTAAAGTATGATGTGATTCATTTCTGTTTGATTGACATTAAAACAGGAACATGTGGCTAAAATAATTTATAAAGTCTGTAAAAGGGTGAATATTAAACAGAAATCACACACGAGTCGGGACGCCTCTCGCGTTTACACTGATCAAACTCCACACGTGACACCAAAGTCTCTGAACACACTTAAAAAAAAAACCCACACAAATCCATCCCGTCTTTCCAGATCATGTGACCCATGTGAAAACAAGTCCGATAACAGTCTGATATCCCAGAACGTGCGTCTCAGGAGAGAGTGATCCATTAAACCAGTGACAGCGCTGTGAAAGGTCAAAGTGCGTGTGAAACTACTTGAACATCAAACGCTCAGGTACCGGAGGAACGTCAGTGTCTGCAGGGTCCGAACCGGTCCAGATCCGAGCGATCGATCGCCGTCGACGAGACTGTGGCGCCT
>TU125602
TTAACTTTAAATGAACGTTCTATTAATAACAGATTTGGCTGTACAAGTCTATTAATGAACGTTTGTTCATAACTTTGAGAGAACCTTGTCAGAACGTTCCCTGTGAGCTGAGATAGGGCTCAATGTTTAGTATTCTCACACACACTCACACACACACACACACACACACACACACACACACACACACACACACACACACACGACTCACACATGGACTGATCCGTGACCTTTAAAGTATGATGTGATTCATTTCTGTTTGATTGACATTAAAACAGGAACATGTGGCTAAAATAATTTATAAAGTCTGTAAAAGGGTGAATATTAAACAGAAATCACACACGAGTCGGGACGCCTCTCGCGTTTACACTGATCAAACTCCACACGTGACACCAAAGTCTCTGAACACACTTAAAAAAAAAACCCACACAAATCCATCCCGTCTTTCCAGATCATGTGACCCATGTGAAAACAAGTCCGATAACAGTCTGATATCCCAGAACGTGCGTCTCAGGAGAGAGTGATCCATTAAACCAGTGACAGCGCTGTGAAAGGTCAAAGTGCGTGTGAAACTACTTGAACATCAAACGCTCAGGTACCGGAGGAACGTCAGTGTCTGCAGGGTCCGAACCGGTCCAGATCCGAGCGATCGATCGCCGTCGACGAGACTGTGGCGCCT
>TU125599
TATTTGTTTTAATTTTTTTCCCCTAGTAATTTTAGTGCTTCAACTTAAACTTACTTCACCAAGTCGCCAAGGATAATAGTTTTAGTTAATGATGATAACCCTGCATCAGAATAATGTCAACGCAGAAACCTTAAAATGTTTTGCTTTATTTTATTTAAAGCAAAATGTAATTTCTTTGATGTTCATGTTTTCTGTTATATTCAGATTTCCATCTCATGTGTGTGTGAGACCATAACATGTCAGTTCAGGGCTTTATGAGCAGCACTTTCAGGAATGATTCAGAGCAGAGAATCAAACGCAGAAACACTGAGAGAAACTCCTGTGAGAGTCTGACAGATTAAACATGTTTGACTGAATCTCATTTAGACTGCTAACCTAACATGGTAACATCTACATTAACTGCTTTTAAGTCAAAAATATTAACATCACTGAATCACCCCAAATACATTCATTTATACCAACAAAACTCATTTTTATGGGTTAAATCAAGGTAGAAAGAGCTCTTTAAGGTAACAATCGCAGGTTACCACTGCTTTCACAGGTTTATTATTAGTAGTAAATTAAAACTAAAACCATTAAAAACATTTTTGTTACTTTAAACAAAACAAATGTTCACTGAAATAAAATGAGATATTAAAAAAACCCTTGAACTTATTTATCAAGTTGCCAAAGCAACATTTCTCATTTTCATTTGGGTTAAGTTGATGAAACAAAATTATTTCATCAAAATTATTAAACTAAAATAAAAATTATTATAAACTAAATAGACATTGAAAATGAAAATGTGACACTTTACAATAAGTTTTAATTTGTTACTATTAGTAACAGTTAACATAAAAAATACCTCGACAGCTTTTAATTATCTAAATGTTAATCTCAACATTTACTAGTATTAAAATCAAAAAGTTTTATCTGTTAACATCAGTTAATGCTCTGTGAACTAACATGAACAAACAATGAATGACTAAAGATTCATGTTAACTAATGCATTATCTAATGTTACTAATGAAACTTTATTGTAAAGTGTTATTAGAATGAAAATGGGAAATTGAGAATTGGGAAGGAAATGAGAAAATGGGAATTGATTCAGAAAAATTAGTGCATTTTCTCTAAAATCTCAAAATCTTGTATCAAAGTCCATATTTAAAACTATTGACTGTCTTAATTAATGTTCCTGGTCTTACTGTGTATGGTTCATCAGATGTTATTCTTAATAAATAAATGCATGTCTTCATAATACTAACAGCTACTAGTTCATTTGAATGTTAACCAATAGTCAATAGCTATTCATTTTTTCTCAAATCTTGCATGCTGTAATTTTCACATAATAAAATCAATTATTGAGTCATCACACAAACACTGTAAAACATTTAGAATTATGATTTTTTACACACTGATCAAATTTAACAAGCAAAACATGTACAAAGATTAATCAAAAGCAGGTAAAATCTCAACATGCTAATGTCAAAATCATCTTTTATTTCGACACTAAACACCCTGTTTTAAAAGAATAGTTCACCTAAAAATGAAATTAACTTCTTCCACATGGAAAAGAAAGATATGTTCCGTCTATATAATGAAAGTCAATGGGGTCCAAAACAACACTGACTTTCTTTGTATGGACACAAAAAGACGTATGTCAAAATATCTTTATGTTCCACAGACGAAAGAAAAAGTGGTATCAGTAAATGATCATTTCAGGCGAACATGTAAACTGATCTATATTTTTCAGATGTCTCATCTGATTATTGACTGATGGATGAATGTGTAATACTTCAACTTTAACACAAGTCTTCATTTTTAGCAGTTAAAACACTAAATGAACACATCTGACAGGAAATAACTGCGCAAACTCATTGACGCCGCTGATTTAATTCCACATGAAACTCTCAAAATGAGACACTAATTGAATGGAATCACGTGATCAGATAAAATTCATTAAACACATCAGATTCATTAACGAGTCCCAGTGTGTGTGTAAACTAAACGAATGTGATTTTACACTTTTCTCTCATTAAAACATAAAAATCAGTCTCATATGGAATGCTGAACGTGTGAAACATCATGATTAAATTATAAAGGCTAATCAGATGAAAAAAGTTATATTACATCAATATCAATAAAACATCACTTCATTTTCTACAGGATTCAATATGAAACAGACGCATGAAGTACTCGGACACACACACACACACACACACACACACACACGACTCACACATGGACTGATCCGTGACCTTTAAAGTATGATGTGATTCATTTCTGTTTGATTGACATTAAAACAGGAACATGTGGCTAAAATAATTTATAAAGTCTGTAAAAGGGTGAATATTAAACAGAAATCACACACGAGTCGGGACGCCTCTCGCGTTTACACTGATCAAACTCCACACGTGACACCAAAGTCTCTGAACACACTTAAAAAAAAAACCCACACAAATCCATCCCGTCTTTCCAGATCATGTGACCCATGTGAAAACAAGTCCGATAACAGTCTGATATCCCAGAACGTGCGTCTCAGGAGAGAGTGATCCATTAAACCAGTGACAGCGCTGTGAAAGGTCAAAGTGCGTGTGAAACTACTTGAACATCAAACGCTCAGGTACCGGAGGAACGTCAGTGTCTGCAGGGTCCGAACCGGTCCAGATCCGAGCGATCGATCGCCGTCGACGAGACTGTGGCGCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU125600 False 526 lncRNA 0.46 2 57204 93449
TU125601 False 524 lncRNA 0.46 2 57204 93449
TU125604 False 522 lncRNA 0.46 2 57204 93449
TU125602 False 676 lncRNA 0.44 2 87694 93449
TU125599 True 2686 lncRNA 0.33 2 90698 93449

Neighbor

gene id symbol gene type direction distance location
CI01000020_00108833_00112799 NA coding downstream 15384 108833 ~ 113427 (+)
CI01000020_00126243_00220377 SND1 coding downstream 32794 126243 ~ 221460 (+)
CI01000020_00250359_00289375 SND1 coding downstream 156910 250359 ~ 289375 (+)
CI01000020_00466505_00489442 NA coding downstream 372827 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 407741 501190 ~ 503119 (+)
G110539 NA non-coding downstream 1300 94749 ~ 95258 (+)
G110554 NA non-coding downstream 2914 96363 ~ 98046 (+)
G110552 NA non-coding downstream 4761 98210 ~ 101064 (+)
G110581 NA non-coding downstream 25712 119161 ~ 137052 (+)
G110609 NA non-coding downstream 220822 314271 ~ 314519 (+)
G110562 NA other upstream 9164 30693 ~ 48040 (+)
G110589 NA other downstream 87329 180778 ~ 226848 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 717450 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 974607 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1282920 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2350795 2443278 ~ 2444944 (+)

Expression


Co-expression Network