G110554


Basic Information

Item Value
gene id G110554
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 96363 ~ 98046 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125629
GATGGATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGGATGGATGGATGAGGGATGGAGAGATGGATGGAAGGATGGATGGAGGGATGGATGCATGGATGGATGAAGGGGTGTATGGATGGATGGAGGAATGCATGGATGAATGGAGGAAGGGATGGATGGATGGATGGATGGATGGATGGATGGAAGGAGGGAAGGAATGACAGACAGAATCCTGATTTGTTTGTTGTGTCACTATTTCAGATGTTTCAATGTAATTAATTAGCAGCTTTTCATCAAATCACAAACTCCAGTTTGAGAAACTCTGCTTTAGAGGGTAAAGTCACACCATATCAACATTATTTACAGAGAATATAACTGATACTGACACTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGGGTGAAATGAACCTTTACCCTTGTTTGTCTGAGTCAGAATCTTGTTCAAACACACACACACACTAACACACACTCAGTGATTTCTCACCACTGCTGTCTCTCATGCTTCTCCTGTTTCTCACTTTCATAGATGACTGTGAGACCCCAACTACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAAGAGTTAAACACAACTCTCTATCTGTTATGATTTCCACAGATGATCATGTCCAGAATCTCAAATGCACCTGTAATATTACATTATTATATTTGTACACCTGCAGCATCATCTGATTGGCTGACGCAGTCATCAGTGCTGTATGAACCAGATCTAACAGTTCTCTACATCCACTTCTCTTATTGAACAGTTATTAAATATGAACAGTGAAGCAGCTCCGCTGAAGATCATTGAGGCACTTTACAGCTCAAACAGAAGAAACTGAAGGATTCCTGTAAGAGCCTGAACTGCACGATTCATCCACTGACCCTATAAATGATCTTTAAATGATCAGCATGATCTGATAAACCTGATCTGATCGCACAAAACCTACTACATGCACTCGTTCTTTTTTAGCAAGTAAAAGTCTTGCACCAGATTTCATATTTTTGCTCAGTTTGAGTCTCTGAGTTTGAGTTCCTCCATGTTCTCACTATATCAGACTAAATGAGCCATAAAGGCCTGATGGATCAAATGTGATATTAACATAAAACACCTATGCAAACTTTTTTTTTTTGTCTAAGAGGTCCAATAAACTGTTCCATTTCAAACATTGATATTTTTTGGACTATTATTTCATATGTCAGGCTTTACAGGGTTATACTGTATAAACTGAGCACTGAATCAGCAGGTTATGAGCGTCTCTCTGATTCTGTGTGGACTCACACTGACACCTGCTGGTCAGGAATCACAGCGCACCACCGGCACATCCCCAGATTATTCATGAATATTCTCTAAATATTCAAAACATCCAGAGTTTTTAACATGTTTTTTCTTGGTTATGTGAGCATTAATGCAACATTCCATTGTATCATTCTTCAAACATTATGTGAACGTTACTTTTGAATGTTCTCTGAACGTTCTGAA

Function

NR:

description
PREDICTED: chromobox protein homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125629 True 1533 lncRNA 0.40 3 96363 98046

Neighbor

gene id symbol gene type direction distance location
CI01000020_00108833_00112799 NA coding downstream 10787 108833 ~ 113427 (+)
CI01000020_00126243_00220377 SND1 coding downstream 28197 126243 ~ 221460 (+)
CI01000020_00250359_00289375 SND1 coding downstream 152313 250359 ~ 289375 (+)
CI01000020_00466505_00489442 NA coding downstream 368230 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 403144 501190 ~ 503119 (+)
G110539 NA non-coding upstream 1105 94749 ~ 95258 (+)
G110538 NA non-coding upstream 2914 57204 ~ 93449 (+)
G110552 NA non-coding downstream 164 98210 ~ 101064 (+)
G110581 NA non-coding downstream 21115 119161 ~ 137052 (+)
G110609 NA non-coding downstream 216225 314271 ~ 314519 (+)
G110615 NA non-coding downstream 225020 323066 ~ 323265 (+)
G110616 NA non-coding downstream 226418 324464 ~ 324703 (+)
G110562 NA other upstream 48323 30693 ~ 48040 (+)
G110589 NA other downstream 82732 180778 ~ 226848 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 712853 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 970010 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1278323 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2346198 2443278 ~ 2444944 (+)

Expression


Co-expression Network