G110552


Basic Information

Item Value
gene id G110552
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 98210 ~ 101064 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125626
ACACTGATGCATTCACCATCTTCAACTGTATTTGTGTAGCGCTTCTCAAAACACACAACAAAAAGGTCTTCATGGCATGAGCACCTATGACACCTTAAAATGCTGTTTATTTAGAAAGCTCACTAGGGTTTAGTACAGTTTTAATAATAATTCAGATTTAATCTCACCATGTGGGTGGGCGGAGCTTCTTTTTAATGCCGTGATAGACTTTCAGACACTTGACGGGCCATTCTCTCTCCGGACGGTTACTCTGAAAAGAAAGAGAGAGAGAGAGAAATATACCTACTAAAACACACACACTCCACCGAGAACCCAAAACTACAGGAAAACCACCACCTGAGAACCCATTAAACCAGAACAAGACAGACCAGTGACACTAAACCTCTACCTACACACACACACACACACACACACACACACAAAAGGAACCTTATCAAGCAGTAATGTTGAGCGTTGAGGACGTCAGCACACTATAACTAGGTGAACCCCCTCTCTCTCGCACACACTATCTGTACTCACACACTGCAGCTCTGGGCTTTGCAGCTTTTGCAGATTCTGTGTATGAGAGTTTGACAGTAAAACATCAATCAGATGCTCACTCGTTTGCTCTCTCACACTGACTGTATTTACACGCACAACAAATCACATTTAAGCTCTATATAGTGCAGCCGTATTCAGAATATGATGTTTATATGTGTCCTGGCATCAGAATATTGCTGTATACATGATTGCTGTAAGTCTGTTGTACATGACATCAGCGCTCTGCATGTCACATGTCAAGAGGTCAGAGAGGTCATTTACGTTCTGAGGATCAGAGACATGCAGGACGACGATCATGAAGCAACTACAACCTGAATTCCGGAAACGTTGGGACTTTCTTTAAATTTGAATAAAATGAAAACAAAAAGACTTTCAAATCACATGAGCCAATATTTTTCAAATTTGAAATGAGCTCATTTAGTGGATACAAGTGTAAAATTTCTCCTTTTAAACATTTATGTTATCCATGTTCTATTGTGAATAAAATATTGGCTCATGTGGTTTGAAAGTCTTTTAGTTTTCACCAACATTTCCGGAATTCGGGTTGTACATCATGACCACTTTTTTGGTGCAAATAACATTAGTTCAGGTTTGAATTTGCCATCAGGGAGAAAATTAAATGGACTATCATATTATCATATACAGATGTTTAATATGACACACGCTCTTACCCTGACTTCTTTATAGAGTCTGAGCGAGGTGCTGGTCAGGATGAAGTATCGGTCATTGAAGCTGCCGGTGCTCAAACCCAATCCCAGCAGACTCCTCTCCTCTCTGAACTTCATCATGCCGTGTTTGGAAACCT
>TU125627
TTTTTAATGCCGTGATAGACTTTCAGACACTTGACGGGCCATTCTCTCTCCGGACGGTTACTCTGAAAAGAAAGAGAGAGAGAGAGAAATATACCTACTAAAACACACACACTCCACCGAGAACCCAAAACTACAGGAAAACCACCACCTGAGAACCCATTAAACCAGAACAAGACAGACCAGTGACACTAAACCTCTACCTACACACACACACACACACACACACACACACAAAAGGAACCTTATCAAGCAGTAATGTTGAGCGTTGAGGACGTCAGCACACTATAACTAGGTGAACCCCCTCTCTCTCGCACACACTATCTGTACTCACACACTGCAGCTCTGGGCTTTGCAGCTTTTGCAGATTCTGTGTATGAGAGTTTGACAGTAAAACATCAATCAGATGCTCACTCGTTTGCTCTCTCACACTGACTGTATTTACACGCACAACAAATCACATTTAAGCTCTATATAGTGCAGCCGTATTCAGAATATGATGTTTATATGTGTCCTGGCATCAGAATATTGCTGTATACATGATTGCTGTAAGTCTGTTGTACATGACATCAGCGCTCTGCATGTCACATGTCAAGAGGTCAGAGAGGTCATTTACGTTCTGAGGATCAGAGACATGCAGGACGACGATCATGAAGCAACTACAACCTGAATTCCGGAAACGTTGGGACTTTCTTTAAATTTGAATAAAATGAAAACAAAAAGACTTTCAAATCACATGAGCCAATATTTTTCAAATTTGAAATGAGCTCATTTAGTGGATACAAGTGTAAAATTTCTCCTTTTAAACATTTATGTTATCCATGTTCTATTGTGAATAAAATATTGGCTCATGTGGTTTGAAAGTCTTTTAGTTTTCACCAACATTTCCGGAATTCGGGTTGTACATCATGACCACTTTTTTGGTGCAAATAACATTAGTTCAGGTTTGAATTTGCCATCAGGGAGAAAATTAAATGGACTATCATATTATCATATACAGATGTTTAATATGACACACGCTCTTACCCTGACTTCTTTATAGAGTCTGAGCGAGGTGCTGGTCAGGATGAAGTATCGGTCATTGAAGCTGCCGGTGCTCAAACCCAATCCCAGCAGACTCCTCTCCTCTCTGAACTTCATCATGCCGTGTTTGGAAACCTCCACTTTACTGGCTGGAGGAAACACACACACACACACACACACACACACACACTCAATCAGGAAACAATAAACAAAACACTGCATATGTCACCTGATCTACATGAGCACATGTTCTAGTGCTTCTAAATAAAACTGATTAATAATGCATTTATTATTTAATACAGTTTATTCATCCCACAGCCTTGGAAAACCTGGATGTACAGTATGTAAAAGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU125626 False 1345 lncRNA 0.40 2 98210 100847
TU125627 True 1374 lncRNA 0.40 2 98398 101064

Neighbor

gene id symbol gene type direction distance location
CI01000020_00108833_00112799 NA coding downstream 7769 108833 ~ 113427 (+)
CI01000020_00126243_00220377 SND1 coding downstream 25179 126243 ~ 221460 (+)
CI01000020_00250359_00289375 SND1 coding downstream 149295 250359 ~ 289375 (+)
CI01000020_00466505_00489442 NA coding downstream 365212 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 400126 501190 ~ 503119 (+)
G110554 NA non-coding upstream 164 96363 ~ 98046 (+)
G110539 NA non-coding upstream 2952 94749 ~ 95258 (+)
G110538 NA non-coding upstream 4761 57204 ~ 93449 (+)
G110581 NA non-coding downstream 18097 119161 ~ 137052 (+)
G110609 NA non-coding downstream 213207 314271 ~ 314519 (+)
G110615 NA non-coding downstream 222002 323066 ~ 323265 (+)
G110616 NA non-coding downstream 223400 324464 ~ 324703 (+)
G110617 NA non-coding downstream 223871 324935 ~ 325154 (+)
G110562 NA other upstream 50170 30693 ~ 48040 (+)
G110589 NA other downstream 79714 180778 ~ 226848 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 709835 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 966992 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1275305 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2343180 2443278 ~ 2444944 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G221618 NA non-coding NC_047608.1 CM018554.1 6687589 ~ 6688311 (-)
tiger barb (Puntius tetrazona) G176924 NA non-coding NW_025047826.1 JAEQBD010000171.1 618129 ~ 619129 (-)
mexican tetra (Astyanax mexicanus) G193367 NA non-coding NC_035918.1 CM008321.1 27723860 ~ 27724105 (-)