G110617


Basic Information

Item Value
gene id G110617
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 324935 ~ 325154 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125700
ATGTAACATGTTCGTTTGAGAGAAATTTTAATATTCAATATGGCTGCTGTAGGAATGAAGGTTTTGGCGTTTTTTGGTGAAAAGAGCCCATTTCCAATTTGAAACTTCCCCCATTATAATCAGCAATGCAGTCACAGCTTCATCGGTTATAATAGGGGAAATCTTGTTGTGCTGCGTCATTGTGGCAGTATAGTGGGAGGTGTCACTTGCTTGATGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125700 True 220 lncRNA 0.40 1 324935 325154

Neighbor

gene id symbol gene type direction distance location
CI01000020_00250359_00289375 SND1 coding upstream 35560 250359 ~ 289375 (+)
CI01000020_00126243_00220377 SND1 coding upstream 103475 126243 ~ 221460 (+)
CI01000020_00108833_00112799 NA coding upstream 211508 108833 ~ 113427 (+)
CI01000020_00466505_00489442 NA coding downstream 141122 466276 ~ 489664 (+)
CI01000020_00501322_00502978 LEPB coding downstream 176036 501190 ~ 503119 (+)
CI01000020_00536611_00538626 NA coding downstream 209780 534934 ~ 538982 (+)
CI01000020_00603718_00606833 NA coding downstream 278432 603586 ~ 607523 (+)
CI01000020_00621182_00624570 RAP1B, RAP1A coding downstream 296028 621182 ~ 625201 (+)
G110616 NA non-coding upstream 232 324464 ~ 324703 (+)
G110615 NA non-coding upstream 1670 323066 ~ 323265 (+)
G110609 NA non-coding upstream 10416 314271 ~ 314519 (+)
G110581 NA non-coding upstream 187883 119161 ~ 137052 (+)
G110552 NA non-coding upstream 223871 98210 ~ 101064 (+)
G110619 NA non-coding downstream 3243 328397 ~ 328731 (+)
G110625 NA non-coding downstream 13450 338604 ~ 338809 (+)
G110634 NA non-coding downstream 20986 346140 ~ 346431 (+)
G110640 NA non-coding downstream 26742 351896 ~ 352125 (+)
G110641 NA non-coding downstream 27753 352907 ~ 353517 (+)
G110589 NA other upstream 98087 180778 ~ 226848 (+)
G110562 NA other upstream 276895 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 485745 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 742902 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 1051215 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 2119090 2443278 ~ 2444944 (+)
G111183 NA other downstream 2322357 2647511 ~ 2658913 (+)

Expression


Co-expression Network