G110727


Basic Information

Item Value
gene id G110727
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 453183 ~ 541078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125813
CAGGACTTTTATTTTTACATTTTATCATTCATTTCATATTAGTTTAAGTTTTAGCAATTTTGTTATGTGCTTTTGTCATTTTATTTATTTTTTAATATTTCTATTTAGCTTTATTTTTATTTTATTTTTTTCTCTTTTTTTCAACAATATTGAACAGGATAAGCAATCTCAGTTGAGTACACTGTGGTAAACAAACTTGGCTCTTGAGTTCTTGAGTGTGGGCAAAGCAACATACTAACAAGCAACATCCAGTTGACTAAAGGATGTAAACCGTGTCTTTGTACATCATTATACTGAGAATTTTGCGTGGATAATTTTCCACACATCCAATGCTAAGGTACAGAAAGCATGATTTCTAAACAACAAAACCCTCTACTGGAAAATGCAAAAATCAAAACGAATAGTACTGAAAACGCATTTAAATTCGTATGGATGACATGCTTCATTTGGCAGTGATAGTTTCATGAAGCCATAGGATTTGGCGAGCACGAGTGGCGTTTTGTTTTTTGGGTTAAGACAAATGTGTCCTTCATTTATTACACAATTTAAGGCATGTCACCGGTTCACCCAACACACAAAGCTGTAGGGGACGTTTGGATGACATGGACAAACATTTCTAGGATACTCACAGCATTTATTTGGCTTTTATATAAGATTAAATTGTCAGTTAAAAAAAAAAAAAATGCACTTGGCAGTTACGTAAATAATAATAATAATAAAAAAAAAAATAAAAAAAACCACAGCATGCAAATTAAAACTCTTTGTACCTGTTCAGCAAAAATGTAATCTGGACACAATAGCAAGACACTCTCAGAGCAACTATGTCTATCTACAGATATCGGTTTTGGTATAATTATTTTCAATATGAATCGTACCCAGTTACAGGAAGCGGTATGATGGACATAGAGAAGTCTGTCTCACTGACATTTAACTATCACATTTTCTACATACATCTGTTTTCTGCCTTCTAAAATAAAAATATATCATAAAGCATCTTCAGTAGTTACAAATCTACTACAGAAAAGATTGCCTCAAGTATAGCTGGAGCACTTGGTTTCACGGCAGTCATCATTTTGCAGGTGGATATGGAGATATAGACATTGATGCAGCAACATGATTGCATCAGTTAGGGAGAAAAAAAAAAAAAAGGCTTTGAAGAATATTTGCTCCAAATGCCACCTTGTTTTTGCTGTTCTGCTCATAAACACAGATGCAAAAACACACAGGCAGCTTTTTGGCAACCCTGATGCTCCCATGTTTTTGGGGACTGAATTAGTTTGAGGTCCTGCTCTCAAACTCATTTAATACTTCTCCATCTCTCACTGTGGTGGTTGTGCCTGAGGAACGGTGAAGAGCAGAGAAGGGGTGCTGGCAGGGTGGGCTAAGTTCTAGGATTTGTCTGAGGCGTTTGTTCCCATCTGTGTTCTGCCCATTCCATTAGTAAAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125813 True 1448 lncRNA 0.36 2 453183 541078

Neighbor

gene id symbol gene type direction distance location
CI01000020_00250359_00289375 SND1 coding upstream 163808 250359 ~ 289375 (+)
CI01000020_00126243_00220377 SND1 coding upstream 231723 126243 ~ 221460 (+)
CI01000020_00108833_00112799 NA coding upstream 339756 108833 ~ 113427 (+)
CI01000020_00603718_00606833 NA coding downstream 62508 603586 ~ 607523 (+)
CI01000020_00621182_00624570 RAP1B, RAP1A coding downstream 80104 621182 ~ 625201 (+)
CI01000020_00631105_00635541 MCAT coding downstream 90027 631105 ~ 635541 (+)
CI01000020_00643857_00646974 CBLL1 coding downstream 102779 643857 ~ 647559 (+)
CI01000020_00701439_00712656 DEF6C coding downstream 160361 701439 ~ 712825 (+)
G110663 NA non-coding upstream 44019 387647 ~ 409164 (+)
G110645 NA non-coding upstream 95352 357625 ~ 357831 (+)
G110641 NA non-coding upstream 99666 352907 ~ 353517 (+)
G110640 NA non-coding upstream 101058 351896 ~ 352125 (+)
G110634 NA non-coding upstream 106752 346140 ~ 346431 (+)
G110732 NA non-coding downstream 1522 542600 ~ 543136 (+)
G110780 NA non-coding downstream 12111 553189 ~ 553440 (+)
G110783 NA non-coding downstream 14961 556039 ~ 556269 (+)
G110714 NA non-coding downstream 17843 558921 ~ 560207 (+)
CI01000020_00752731_00769950 NA non-coding downstream 213375 752694 ~ 770027 (+)
G110589 NA other upstream 226335 180778 ~ 226848 (+)
G110562 NA other upstream 405143 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 269821 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 526978 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 835291 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 1903166 2443278 ~ 2444944 (+)
G111183 NA other downstream 2106433 2647511 ~ 2658913 (+)

Expression


Co-expression Network