G110780


Basic Information

Item Value
gene id G110780
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 553189 ~ 553440 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU125866
TTTTTAACTTAAATTCCTCTCCGGTCTCATGAGAGGACTTGAATGCAAACCCTATGACCCATTTCCATAATAGTCTAGCACCACTGCTAGATTTAAAAGTCAGCCACAACCAATTACCAGAAGCCAATTGCTAAAGGATGACAGTGCTTAAGGAAATTTACCAAATACCCACCATTGACTGGCCAGCACATTCCACACACGAAAGCGCAAACTAATTTTGATATAATCAGTATAGTCCTTTAATGTGCGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU125866 True 252 lncRNA 0.39 1 553189 553440

Neighbor

gene id symbol gene type direction distance location
CI01000020_00536611_00538626 NA coding upstream 14207 534934 ~ 538982 (+)
CI01000020_00501322_00502978 LEPB coding upstream 50070 501190 ~ 503119 (+)
CI01000020_00466505_00489442 NA coding upstream 63525 466276 ~ 489664 (+)
CI01000020_00250359_00289375 SND1 coding upstream 263814 250359 ~ 289375 (+)
CI01000020_00126243_00220377 SND1 coding upstream 331729 126243 ~ 221460 (+)
CI01000020_00603718_00606833 NA coding downstream 50146 603586 ~ 607523 (+)
CI01000020_00621182_00624570 RAP1B, RAP1A coding downstream 67742 621182 ~ 625201 (+)
CI01000020_00631105_00635541 MCAT coding downstream 77665 631105 ~ 635541 (+)
CI01000020_00643857_00646974 CBLL1 coding downstream 90417 643857 ~ 647559 (+)
CI01000020_00701439_00712656 DEF6C coding downstream 147999 701439 ~ 712825 (+)
G110732 NA non-coding upstream 10053 542600 ~ 543136 (+)
G110727 NA non-coding upstream 12111 453183 ~ 541078 (+)
G110663 NA non-coding upstream 144025 387647 ~ 409164 (+)
G110645 NA non-coding upstream 195358 357625 ~ 357831 (+)
G110641 NA non-coding upstream 199672 352907 ~ 353517 (+)
G110783 NA non-coding downstream 2599 556039 ~ 556269 (+)
G110714 NA non-coding downstream 5481 558921 ~ 560207 (+)
CI01000020_00752731_00769950 NA non-coding downstream 201013 752694 ~ 770027 (+)
G110741 NA non-coding downstream 334688 888128 ~ 888384 (+)
G110808 NA non-coding downstream 339502 892942 ~ 893173 (+)
G110589 NA other upstream 326341 180778 ~ 226848 (+)
G110562 NA other upstream 505149 30693 ~ 48040 (+)
CI01000020_00810993_00815495 CDPF1 other downstream 257459 810899 ~ 816510 (+)
CI01000020_01083614_01106789 PLXNC1 other downstream 514616 1083230 ~ 1107257 (+)
CI01000020_01375811_01378288 AVPR2L other downstream 822929 1373164 ~ 1379068 (+)
CI01000020_02444149_02444833 NA other downstream 1890804 2443278 ~ 2444944 (+)
G111183 NA other downstream 2094071 2647511 ~ 2658913 (+)

Expression


Co-expression Network