XLOC_008174


Basic Information

Item Value
gene id XLOC_008174
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 50693992 ~ 50696782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00016089
ATGACTGGGATAATAATGTCATCTGTCCTACTCCTTCTGCATCTCCTACCTCCTCCTTCAGAGAGAAAGATGACTAAGATCAGTTCAACAGAGGCCTTTGAAAGACTTGTGCATTTCCATAAGTCTTGCACCAGCATTGAAGACCATCTCAGTGAGAGGAAGGGCCAACAGCGATATCTCCTAAGATCAGGAAGGATCAAGGGGAGGATTGACCATTTCTATGTGGTTATGGACAAACATCTCGTCTCTTGTGCAGCAACCAGGTCCTTGACTGCTGTTGATGAACTCTTTAAAGACTATGTGTTTAACTTGACGTACGAGGAAGCCCTTGTCTACATCTTTACCTTTCTGCAGACTACAGTCTACAACATCGATGTTGGACCTACCAGTGAGTCATCCAGGGTAAAGAAACTGCGTGCAAAGCTTTTACACTAAATGTTTCTTTTACAATAATGTGTTGGTGTTGTCAGCTTGCAAGCAAGCAGCACCTCTTTAAGACTCTCACAGTTTTTGATACTGAAAATGCTGTACATTTTATGTTGGTTTAACTTTTCGTATAAGatgcattgttaaaaataaaagttgaaaCTGGTAAActgttctgacttttttttaactgaTCAATGCAAACTGTCCTGTAATGCAGTAAACAatctatataattaaaaatacatttaaatatca
>TCONS_00016090
TGATTTCACCCACAAGATCATCAACAGCCAGCACATGTACTGATACAGTTTCACTCTCTCTAACGGATCATGAAGACCCAGAACGAACAATGCAGAATCAATTGACAAGGACTAAGAGCTGCTTGATAGTAGATGGTAAAAGGGCAAAACAGATTGTTTAAGATGCATTGGGAAAGCAATCTGGTGTTGATGACGTACTTGATGAATACAAGGTCACAAAAACTTAAGGGCCACAGCACTAGACGGCAGCTGGTTAATATTGTCGTCAATCACATGAAAGATTCATGGGTAAGATTTCATTAAATATATGCAAGAaaagcaaagatttttttttaaaccaaaaaaaaaaaaagtaaaaagttaagTACTgtctttaatcaaatattttactGATTGTTAGGAGAATCCCCATGTGCAAGCAACGGGAGACTTATGCTTTGGAcattatttctctttttcccagcCTGAGAGACCCATTTTccgacacccctggtttaaaggtttatgttttttatttttatttgtatcataCAGTCAGTCTTTTTAATGTAActggcattttttaaatatttcttatctATATTACAGGAACATTTTTAGGATCCAGAAAAGGGAACCGTTTGTAATAAATCTAATATGCTTCTTTCTTAGATTATTTAAGACTTTGGTCTCCTGTTCAATGCTGAAACATCCAACAAGTTGCTTTAGAGGTGGGAGACCGCATTTAAGCACAGGATCGTCAATGAGGCGAAATCTCTAACTTCAACTGCCAGACTTCATTGTCTTATTAATTCAGCAGAAGGACAAGAATCTGAAAATGGTACGATTTCTAAGGattttgtagtttgaaatttgCTTTGGTTTCTTTTGTATTTGTGAGCTATAAGTGTGAATGTGGGCTtgcttcattttaatattaatacgtATGACTTTTTTTATCGTCATTCATTCAGACTGGGATAATAATGTCATCTGTCCTACTCCTTCTGCATCTCCTACCTCCTCCTTCAGAGAGAAAGATGACTAAGATCAGTTCAACAGAGGCCTTTGAAAGACTTGTGCATTTCCATAAGTCTTGCACCAGCATTGAAGACCATCTCAGTGAGAGGAAGGGCCAACAGCGATATCTCCTAAGATCAGGAAGGATCAAGGGGAGGATTGACCATTTCTATGTGGTTATGGACAAACATCTCGTCTCTTGTGCAGCAACCAGGTCCTTGACTGCTGTTGATGAACTCTTTAAAGACTATGTGTTTAACTTGACGTACGAGGAAGCCCTTGTCTACATCTTTACCTTTCTGCAGACTACAGTCTACAACATCGATGTTGGACCTACCAGTGAGTCATCCAGGGTAAAGAAACTGCGTGCAAAGCTTTTACACTAAATGTTTCTTTTACAATAATGTGTTGGTGTTGTCAGCTTGCAAGCAAGCAGCACCTCTTTAAGACTCTCACAGTTTTTGATACTGAAAATGCTGTACATTTTATGTTGGTTTAACTTTTCGTATAAGatgcattgttaaaaataaaagttgaaaCTGGTAAActgttctgacttttttttaactgaTCAATGCAAACTGTCCTGTAATGCAGTAAACAatctatataattaaaaatacatttaaatatca
>TCONS_00016091
ATGTTGGTGAAAGTTCTATATCAAGGAgtgaaaaaatatgtaaaattgctTACTGATTTTACATTTCAATGTTTTCGCAGTGAAGtgaaaagcAAATTTGGATTATCAACAACTGCAGATCTTCAAGTTTTTAATGACAATGACACTAATGTAAAAGAGGACATCTTCCAAGAGTTAATGGACAGCAGTCCACATTTATGCTTGACTTATATGTTTGGAAGAAAATATTTCTGCTGGCCTGCCTGAGggtaattattcaataaatattcgGACAGTTTAAAATGCCTCTGTTTTACAGTAGTATAAGTCAAAACAGTTAGAATTAAGTAAAAAGAAGAAATTCATAGAAGAGCTTACTGAACAGTGGAGTGTATATAGAAATAAAGAGTTTTTATATGTTTCTTGACCATTGCCAGGTGTTCGTTTAGCTTAAGTTCATGTGATGCCCAGTGATGAAAGGTTGATCAAAATAGTCTGTCAAAACCACAGTGTAGAAAAACATTGAGGATGATGGTGTATAGTAAAAGCTATTAGTAAAGCATTGTtttaaattaagttgaaataTAAGATAAATTTATTGTAAACTAAAGAAAATATAACGTAAaggttaataataatgttttccatTTCTCCATCAGTGATTTCACCCACAAGATCATCAACAGCCAGCACATGTACTGATACAGTTTCACTCTCTCTAACGGATCATGAAGACCCAGAACGAACAATGCAGAATCAATTGACAAGGACTAAGAGCTGCTTGATAGTAGATGGTAAAAGGGCAAAACAGGTATATGCATATGTTGTTTGTTatggttaattttattattttaattataacctTTTTTCTGGTCACTTTATCAGATTGTTTAAGATGCATTGGGAAAGCAATCTGGTGTTGATGACGTACTTGATGAATACAAGGTCACAAAAACTTAAGGGCCACAGCACTAGACGGCAGCTGGTTAATATTGTCGTCAATCACATGAAAGATTCATGGGTAAGATTTCATTAAATATATGCAAGAaaagcaaagatttttttttaaaccaaaaaaaaaaaaagtaaaaagttaagTACTgtctttaatcaaatattttactGATTGTTAGGAGAATCCCCATGTGCAAGCAACGGGAGACTTATGCTTTGGAcattatttctctttttcccagcCTGAGAGACCCATTTTccgacacccctggtttaaaggtttatgttttttatttttatttgtatcataCAGTCAGTCTTTTTAATGTAActggcattttttaaatatttcttatctATATTACAGGAACATTTTTAGGATCCAGAAAAGGGAACCGTTTGTAATAAATCTAATATGCTTCTTTCTTAGATTATTTAAGACTTTGGTCTCCTGTTCAATGCTGAAACATCCAACAAGTTGCTTTAGAGGTGGGAGACCGCATTTAAGCACAGGATCGTCAATGAGGCGAAATCTCTAACTTCAACTGCCAGACTTCATTGTCTTATTAATTCAGCAGAAGGACAAGAATCTGAAAATGGTACGATTTCTAAGGattttgtagtttgaaatttgCTTTGGTTTCTTTTGTATTTGTGAGCTATAAGTGTGAATGTGGGCTtgcttcattttaatattaatacgtATGACTTTTTTTATCGTCATTCATTCAGACTGGGATAATAATGTCATCTGTCCTACTCCTTCTGCATCTCCTACCTCCTCCTTCAGAGAGAAAGATGACTAAGATCAGTTCAACAGAGGCCTTTGAAAGACTTGTGCATTTCCATAAGGTAAAACTCACAATATTTTCGAAAGtcttttcattgttattattaaggtTGTTAAGACCATTATGCGAAGCtataaaatgtaccttttgaaactttttttttcaaaagccaATACATTCAGTTGAATGCTGTTGAAGAATGTACGTTACATCTTG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00016089 False 684 lncRNA 0.39 3 50693992 50695177
TCONS_00016090 False 1634 lncRNA 0.37 3 50693992 50696068
TCONS_00016091 True 1940 lncRNA 0.33 2 50694767 50696782

Neighbor

gene id symbol gene type direction distance location
XLOC_008173 NA coding downstream 370218 50323136 ~ 50323774 (-)
XLOC_008172 abhd18 coding downstream 665517 49994501 ~ 50028475 (-)
XLOC_008171 fam193b coding downstream 701283 49944368 ~ 49992709 (-)
XLOC_008170 CABZ01074913.1 coding downstream 750193 49931223 ~ 49943799 (-)
XLOC_008169 NA coding downstream 775167 49913511 ~ 49918825 (-)
XLOC_008175 CU302253.1 coding upstream 142500 50839282 ~ 50892442 (-)
XLOC_008176 NA coding upstream 275628 50972410 ~ 50986606 (-)
XLOC_008177 faf2 coding upstream 297356 50994138 ~ 51014292 (-)
XLOC_008178 cltb coding upstream 327172 51023954 ~ 51039702 (-)
XLOC_008179 unc5a coding upstream 467274 51164056 ~ 51619458 (-)
XLOC_007641 CU855896.1 misc downstream 48286152 2407736 ~ 2407840 (-)
XLOC_007640 CU855896.2 misc downstream 48286561 2407328 ~ 2407431 (-)
XLOC_007639 CU855896.3 misc downstream 48286920 2406945 ~ 2407072 (-)
XLOC_008166 CABZ01072361.1 non-coding downstream 939042 49754834 ~ 49754950 (-)
XLOC_008165 NA non-coding downstream 1203273 49488881 ~ 49490719 (-)
XLOC_008180 CABZ01070359.1 non-coding upstream 576403 51273185 ~ 51273300 (-)
XLOC_008181 CABZ01066915.1 non-coding upstream 1056298 51753080 ~ 51753197 (-)
XLOC_008182 NA non-coding upstream 1129296 51826078 ~ 51837387 (-)
XLOC_008184 NA non-coding upstream 1206377 51903159 ~ 51903638 (-)

Expression


Co-expression Network